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Issues list

[ENH] How to handle fMRIPrep's outputs for multi-session data without causing errors of merging/unzipping? roadmap
#23 opened Feb 1, 2023 by zhao-cy
2
[ENH] Determine the strategies for cluster abstraction
#28 opened Feb 19, 2023 by zhao-cy Make BABS compatible to Slurm cluster system
[slurm] make babs-unzip compatible to slurm roadmap
#34 opened Feb 19, 2023 by zhao-cy Make BABS compatible to Slurm cluster system
[tests] add CircleCI tests of linting
#45 opened Mar 30, 2023 by zhao-cy
[ENH] update required datalad version to at least 0.18+
#50 opened Mar 31, 2023 by zhao-cy
2 tasks
[slurm] make babs-update-setup compatible to slurm roadmap
#54 opened Apr 3, 2023 by zhao-cy Make BABS compatible to Slurm cluster system
[ENH] save the job_status.csv even if the user kills babs-submit or babs-status roadmap
#86 opened Apr 27, 2023 by zhao-cy
[ENH] refactor: move some functions from utils.py to classes in babs.py
#89 opened May 2, 2023 by zhao-cy
[ENH] add --job-csv option to babs-submit
#91 opened May 10, 2023 by zhao-cy
[ENH] sanity check that container config yaml file exists at the beginning of babs-init
#93 opened May 18, 2023 by zhao-cy
[ENH] incorporate job status Rr, a subtype of running state roadmap
#100 opened May 26, 2023 by zhao-cy
[ENH] improve printed messages from BABS functions
#101 opened May 26, 2023 by zhao-cy
2 tasks
[docs] Review updated example walkthrough
#107 opened Jun 21, 2023 by zhao-cy
8 tasks
[DOCS] NMIND checklist - targets that are easy to achieve
#110 opened Jul 7, 2023 by zhao-cy
7 of 12 tasks
Enhancements and features on the roadmap
[DOCS] NMIND checklist: on roadmap roadmap
#111 opened Jul 7, 2023 by zhao-cy
1 of 6 tasks
Enhancements and features on the roadmap
[ENH] incorporating configs from --call-fmt when babs-init roadmap
#112 opened Jul 10, 2023 by zhao-cy Enhancements and features on the roadmap
[tests] infrastructure for automatic pytest of babs-submit and babs-status
#113 opened Jul 10, 2023 by zhao-cy Enhancements and features on the roadmap
[DOCS] minor enhancements in docs after Sydney's review documentation Improvements or additions to documentation
#115 opened Jul 12, 2023 by zhao-cy
1 of 5 tasks
manuscript ready
Test out: XCP-D when FreeSurfer derivatives are needed (i.e., –cifti and --warp-surfaces-native2std)
#123 opened Jul 24, 2023 by zhao-cy
Make parsing of output more robust
#160 opened Dec 8, 2023 by yarikoptic
All templated bash scripts should be "robust" and shellcheck-clean bug Issues noting problems and PRs fixing those problems.
#166 opened Jan 4, 2024 by yarikoptic
Add user-configurable environment variable passthrough enhancement New feature or request
#167 opened Jan 8, 2024 by asmacdo
Make e2e testing run on PRs as well as e.g. weekly enhancement New feature or request
#170 opened Mar 5, 2024 by yarikoptic
[ENH] Add workflow for processing and adding new subjects to BABS results enhancement New feature or request
#171 opened Mar 5, 2024 by mattcieslak
Allow babs-init to create the container dataset enhancement New feature or request
#174 opened Jul 2, 2024 by tsalo
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