This project takes data from the TRsc project (https://github.com/PavlidisLab/TR_singlecell) to perform cell type-specific aggregate coexpression. I explore differing forms of coexpression aggregation, and compare aggregates between mouse and human. The focus is on microglia, but aggregates are also built for macrophages for the purpose of demoing differential coexpression.
This project is intrinsically dependant on data paths from the TRsc project that live on the Pavlab servers, which are not easy to share.