gifA_gifB_RF01739_RF01704

call_doku.sh contains the list of calls that were performed to produce: gifA_gifB_glnA_RF01704_overlap_and_downstream_peptides.csv

Citation

A glutamine riboswitch is a key element for the regulation of glutamine synthetase in cyanobacteria
Stephan Klähn, Paul Bolay, Patrick R. Wright, Ruben M. Atilho, Kenneth I. Brewer, Martin Hagemann, Ronald R. Breaker, and Wolfgang R. Hess
Nucleic Acids Research, 2018, DOI 10.1093/nar/gky709.

Name	Name	Last commit message	Last commit date
Latest commit Patrick R. Wright journal Aug 15, 2018 eb47fb4 · Aug 15, 2018 History 11 Commits
16s_retrieval	16s_retrieval	removed 16s alignment/aln now done in MEGA7	Aug 4, 2017
Rfam	Rfam	commiting doku	Aug 2, 2017
scripts	scripts	bugfix where kegg id was not specific enough and caused unexpected ma…	Aug 3, 2017
LICENSE	LICENSE	Create LICENSE	Aug 2, 2017
README.md	README.md	journal	Aug 15, 2018
RF01704_subseqs_pfam_scan.txt	RF01704_subseqs_pfam_scan.txt	commiting doku	Aug 2, 2017
RF01739_subseqs_pfam_scan.txt	RF01739_subseqs_pfam_scan.txt	commiting doku	Aug 2, 2017
call_doku.sh	call_doku.sh	removed 16s alignment/aln now done in MEGA7	Aug 4, 2017
cluster.tab	cluster.tab	changes MBGD eval to 0.00001 (produces less GifB hits) and switched t…	Aug 3, 2017
cmsearch_RF01704_HP.txt	cmsearch_RF01704_HP.txt	commiting doku	Aug 2, 2017
cmsearch_RF01739_HP.txt	cmsearch_RF01739_HP.txt	commiting doku	Aug 2, 2017
fasta.zip	fasta.zip	changes MBGD eval to 0.00001 (produces less GifB hits) and switched t…	Aug 3, 2017
genomelist.txt	genomelist.txt	commiting doku	Aug 2, 2017
gifA_gifB_glnA_RF01704_overlap_and_downstream_peptides.csv	gifA_gifB_glnA_RF01704_overlap_and_downstream_peptides.csv	bugfix where kegg id was not specific enough and caused unexpected ma…	Aug 3, 2017