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@PathoGenOmics-Lab

PathoGenOmics Lab

An interdisciplinary research group dedicated to unraveling the complexities of microbial pathogens and their relationships with hosts.

Popular repositories Loading

  1. VIPERA VIPERA Public

    A Snakemake workflow for SARS-CoV-2 Viral Intra-Patient Evolution Reporting and Analysis

    Python 3

  2. mycolorsTB mycolorsTB Public

    R Color package for Mycobacterium tuberculosis complex

    R 3

  3. transcluster transcluster Public

    A Snakemake pipeline to find SARS-CoV-2 clusters in a reference phylogeny

    Python 1

  4. misb_training_2024 misb_training_2024 Public

    Master on Integrative Synthetic Biology (MISB) training sessions 2024

    Jupyter Notebook 1

  5. tcfinder tcfinder Public

    A lightweight tool to find clusters of samples within a phylogeny.

    Rust 1

  6. getNCBImetadata getNCBImetadata Public

    🪛 Fetch ncbi metadata for sra and assemblies

    Python

Repositories

Showing 7 of 7 repositories
  • transcluster Public

    A Snakemake pipeline to find SARS-CoV-2 clusters in a reference phylogeny

    PathoGenOmics-Lab/transcluster’s past year of commit activity
    Python 1 GPL-3.0 0 0 0 Updated Jun 20, 2024
  • CrossInfectMTB Public

    Repo for bioinformatic analysis about MTB infections

    PathoGenOmics-Lab/CrossInfectMTB’s past year of commit activity
    Shell 0 GPL-3.0 0 0 0 Updated Jun 19, 2024
  • tcfinder Public

    A lightweight tool to find clusters of samples within a phylogeny.

    PathoGenOmics-Lab/tcfinder’s past year of commit activity
    Rust 1 GPL-3.0 0 0 0 Updated Jun 17, 2024
  • misb_training_2024 Public

    Master on Integrative Synthetic Biology (MISB) training sessions 2024

    PathoGenOmics-Lab/misb_training_2024’s past year of commit activity
    Jupyter Notebook 1 GPL-3.0 0 0 0 Updated May 15, 2024
  • VIPERA Public

    A Snakemake workflow for SARS-CoV-2 Viral Intra-Patient Evolution Reporting and Analysis

    PathoGenOmics-Lab/VIPERA’s past year of commit activity
    Python 3 GPL-3.0 0 0 0 Updated Apr 17, 2024
  • mycolorsTB Public

    R Color package for Mycobacterium tuberculosis complex

    PathoGenOmics-Lab/mycolorsTB’s past year of commit activity
    R 3 GPL-3.0 0 0 0 Updated Apr 4, 2024
  • getNCBImetadata Public

    🪛 Fetch ncbi metadata for sra and assemblies

    PathoGenOmics-Lab/getNCBImetadata’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Jan 28, 2024

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