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Resolving Error in 'run_infer.sh' Script Due to Duplicate 'bfd_database_path' Argument #359

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Resolving Error in 'run_infer.sh' Script Due to Duplicate 'bfd_database_path' Argument #359

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c00fd5f
Update README.md
davidwongmedinfo Nov 15, 2024
30d43ec
Update run_infer.sh
davidwongmedinfo Nov 15, 2024
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Update run_infer.sh 
There are two identical bfd_database_path arguments in the run_infer.sh script, which would lead to error when set 'full_dbs' for 'preset' argument.
@davidwongmedinfo
davidwongmedinfo authored Nov 15, 2024
commit 30d43ec08439ba923494eef069b3fb6d77c3a1f6
3 changes: 1 addition & 2 deletions apps/protein_folding/helixfold3/run_infer.sh
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Original file line number Diff line number Diff line change
@@ -19,7 +19,6 @@ CUDA_VISIBLE_DEVICES=0 "$PYTHON_BIN" inference.py \
--preset='reduced_dbs' \
--bfd_database_path "$DATA_DIR/bfd/bfd_metaclust_clu_complete_id30_c90_final_seq.sorted_opt" \
--small_bfd_database_path "$DATA_DIR/small_bfd/bfd-first_non_consensus_sequences.fasta" \
--bfd_database_path "$DATA_DIR/small_bfd/bfd-first_non_consensus_sequences.fasta" \
--uniclust30_database_path "$DATA_DIR/uniclust30/uniclust30_2018_08/uniclust30_2018_08" \
--uniprot_database_path "$DATA_DIR/uniprot/uniprot.fasta" \
--pdb_seqres_database_path "$DATA_DIR/pdb_seqres/pdb_seqres.txt" \
@@ -36,4 +35,4 @@ CUDA_VISIBLE_DEVICES=0 "$PYTHON_BIN" inference.py \
--init_model init_models/HelixFold3-240814.pdparams \
--infer_times 1 \
--diff_batch_size 1 \
--precision "fp32"
--precision "fp32"