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+Acknowledgements
+================
+
+This page lists the data sources and third party software tools used in PATRIC. Click [here](./publications.html) for a list of PATRIC joint publications with other Scientific Collaborators.
+
+## Data Sources Used by PATRIC
+
+[ARDB (Antibiotic Resistance Genes Database)](http://ardb.cbcb.umd.edu/)
+
+[BIND (Berkeley Internet Name Domain)](http://www.isc.org/software/bind/history)
+
+[BioGRID (Biological General Repository for Interaction Datasets)](http://thebiogrid.org/)
+
+[CARD (The Comprehensive Antibiotic Resistance
+Database)](http://arpcard.mcmaster.ca/)
+
+[CTD (Comparative Toxicogenomics Database)](http://ctdbase.org/)
+
+[DIP (Database of Interacting
+Proteins)](http://dip.doe-mbi.ucla.edu/dip/Main.cgi)
+
+[DrugBank](http://v3.drugbank.ca/)
+
+[EBI (European Bioinformatics Institute)](http://www.ebi.ac.uk/)
+
+-   [ArrayExpress](http://www.ebi.ac.uk/arrayexpress/)
+-   [PRIDE](http://www.ebi.ac.uk/pride/)
+-   [IntAct](http://www.ebi.ac.uk/intact/)
+
+[GAD (Genetic Association
+Database)](http://geneticassociationdb.nih.gov/)
+
+[GO (Gene Ontology)](http://www.geneontology.org/)
+
+[HealthMap](http://www.healthmap.org/en/)
+
+[HMP (Human Microbiome Project)](http://www.hmpdacc.org/)
+
+[IEDB (Immune Epitope Database)](http://www.immuneepitope.org/)
+
+[KEGG (Kyoto Encyclopedia of Genes and
+Genomes)](http://www.genome.jp/kegg/)
+
+[MINT (Molecular Interaction
+Database)](http://mint.bio.uniroma2.it/mint/Welcome.do)
+
+[NCBI (National Center for Biotechnology
+Information)](http://www.ncbi.nlm.nih.gov/)
+
+-   [BioProject](http://www.ncbi.nlm.nih.gov/bioproject/)
+-   [CDD](http://www.ncbi.nlm.nih.gov/cdd/)
+-   [Genome](http://www.ncbi.nlm.nih.gov/genome/)
+-   [GEO](http://www.ncbi.nlm.nih.gov/geo/)
+-   [MMDB](http://www.ncbi.nlm.nih.gov/Structure/MMDB/mmdb.shtml)
+-   [PubMed](http://www.ncbi.nlm.nih.gov/pubmed/)
+-   [RefSeq](http://www.ncbi.nlm.nih.gov/RefSeq/)
+-   [Taxonomy](http://www.ncbi.nlm.nih.gov/taxonomy)
+
+[PDB (Protein Data Bank)](http://www.rcsb.org/pdb/home/home.do)
+
+[PSICQUIC (Protemics Standard Initiative Common Query
+Interface)](http://code.google.com/p/psicquic/)
+
+[STITCH (Search Tool for Interactions of
+Chemicals)](http://stitch.embl.de/cgi/show_input_page.pl?UserId=dew_Cq67PodO&sessionId=1xn5KWSzsTrZ)
+
+[STRING (Search Tool for the Retrieval of Interacting
+Genes/Proteins)](http://string.embl.de/newstring_cgi/show_input_page.pl?UserId=rVAoJJTi6kUC&sessionId=mt_5HRZP5HEI&info_box_type_input_page=general)
+
+[TTD (Therapeutic Targets
+Database)](http://bidd.nus.edu.sg/group/TTD/ttd.asp)
+
+[UniProt (Universal Protein Resource)](http://www.uniprot.org/)
+
+[Victors Virulence Factors](http://www.phidias.us/victors/index.php)
+
+[VFDB (Virulence Factors Database)](http://www.mgc.ac.cn/VFs/)
+
+## Software and Tools used by PATRIC
+
+[BLAST (Basic Local Alignment Search
+Tool)](http://blast.ncbi.nlm.nih.gov/Blast.cgi)
+
+[BLAT](http://www.ncbi.nlm.nih.gov/pubmed/11932250)
+
+[Circos](http://circos.ca/)
+
+[Cluster3](http://bonsai.hgc.jp/~mdehoon/software/cluster/)
+
+[Cytoscape](http://www.cytoscape.org/)
+
+[FastTree](http://www.microbesonline.org/fasttree/)
+
+[Gblocks](http://molevol.cmima.csic.es/castresana/Gblocks.html)
+
+[HMMER](http://hmmer.janelia.org/)
+
+[JBrowse](http://jbrowse.org/) via [The Holmes Lab](http://biowiki.org/)
+
+[Jmol](http://jmol.sourceforge.net/)
+
+[MCL (Markov Cluster Algorithm)](http://micans.org/mcl/)
+
+[MUSCLE (Multiple Sequence Comparison by Log-
+Expectation)](http://www.ebi.ac.uk/Tools/msa/muscle/)
+
+[OrthoMCL](http://www.orthomcl.org/)
+
+
+[PATRIC Data Release Policy](./data_release_policy.html)