Phylogatr Web

Phylogatr described at https://phylogatr.org/.

This repository is the source code for the Phylogatr web app. It also contains the code that downloads, filters and creates the database.

See these links for more details.

Name		Name	Last commit message	Last commit date
.github/workflows		.github/workflows
app		app
bin		bin
config		config
db		db
docs		docs
lib		lib
log		log
packaging		packaging
pipeline		pipeline
public		public
test		test
vendor/assets		vendor/assets
.env		.env
.env.test		.env.test
.env.test.laptop		.env.test.laptop
.gitignore		.gitignore
.gitlab-ci.yml		.gitlab-ci.yml
.rubocop.yml		.rubocop.yml
.zenodo.json		.zenodo.json
CHANGELOG.md		CHANGELOG.md
Dockerfile		Dockerfile
Gemfile		Gemfile
Gemfile.lock		Gemfile.lock
LICENSE.txt		LICENSE.txt
README.md		README.md
Rakefile		Rakefile
add_bold_records.sbatch		add_bold_records.sbatch
align.sbatch		align.sbatch
align_sequences.sh		align_sequences.sh
clean_database.sbatch		clean_database.sbatch
config.ru		config.ru
download_bold_data.sbatch		download_bold_data.sbatch
download_gbif_data.sbatch		download_gbif_data.sbatch
download_genbank_data.sbatch		download_genbank_data.sbatch
env		env
filter_bold_records.sbatch		filter_bold_records.sbatch
filter_gbif_occurrences.sbatch		filter_gbif_occurrences.sbatch
gbif_unzip.sbatch		gbif_unzip.sbatch
generate_alignment_cache.rb		generate_alignment_cache.rb
genes.rb		genes.rb
link_gbif_with_genbank.sbatch		link_gbif_with_genbank.sbatch
manifest.yml		manifest.yml
populate_database.sbatch		populate_database.sbatch
report.pbs		report.pbs
report.rb		report.rb
report_species_metrics.sbatch		report_species_metrics.sbatch
reptilia.json		reptilia.json
submit_pipeline.sh		submit_pipeline.sh
update_alignment_cache.sbatch		update_alignment_cache.sbatch
update_species_metrics		update_species_metrics
update_species_metrics.sbatch		update_species_metrics.sbatch

Navigation Menu