The Nevada Bioinformatics Center thanks NV INBRE and MW CTR-IN, grants from the National Institute of General Medical Sciences (GM103440 and GM104944) of the National Institutes of Health for their support.
Nevada Bioinformatics Center
Core Facility at the University of Nevada, Reno
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- snakemake_rnaseq_combined_workflow Public Forked from hans-vg/snakemake_rnaseq_combined_workflow
Snakemake workflow that runs trimmomatic for trimming, and STAR and/or HISAT2 for aligning.
Nevada-Bioinformatics-Center/snakemake_rnaseq_combined_workflow’s past year of commit activity - snakemake_gbs_sorghum_mapping_workflow Public
snakemake GBS sorghum mapping pipeline for sorghum data using bowtie2.
Nevada-Bioinformatics-Center/snakemake_gbs_sorghum_mapping_workflow’s past year of commit activity - snakemake_ssr_workflow_hipstr Public
A snakemake pipeline to analyze SSR/STR data and call markers in VCF format using HipSTR (https://hipstr-tool.github.io/HipSTR/)
Nevada-Bioinformatics-Center/snakemake_ssr_workflow_hipstr’s past year of commit activity - snakemake_fastqc_mothur Public
Second workflow that takes the output of the guppy workflow to run fastqc and create a multiQC report. Then run Mothur for analysis.
Nevada-Bioinformatics-Center/snakemake_fastqc_mothur’s past year of commit activity
