Limit scope of .git removal #10

	name: Build and Deploy Sphinx Docs

	on:
	push:
	branches:
	- integrate_docs

	jobs:
	build:
	runs-on: ubuntu-latest

	steps:
	- name: Checkout code
	uses: actions/checkout@v2

	- name: Set up Python
	uses: actions/setup-python@v2
	with:
	python-version: 3.8 # Adjust the Python version as needed

	- name: Install dependencies
	run: \|
	sudo apt-get update
	sudo apt-get install -y --no-install-recommends python3-pip python3-dev git git-lfs zip doxygen build-essential unzip wget pandoc ssh fswatch vim tmux zsh
	pip3 install --upgrade "sphinx>=3.5,<5" "nbclient<0.6,>=0.2" docutils==0.16 ablog myst-nb rst-to-myst nbsphinx==0.8.8 sphinx-book-theme==0.3.2 sphinx-copybutton sphinx-design sphinx-prompt sphinxcontrib-bibtex sphinx-tabs==3.2.0 exhale==0.2.3 breathe==4.14.1 sphinx-sitemap ipython sphinxcontrib-openapi sphinx-autobuild linkify-it-py

	- name: Build docs
	run: \|
	sphinx-build -M html docs/monai-cloud-api/ docs/build/html

	- name: Deploy to dist branch
	run: \|
	git config --global user.email "[email protected]"
	git config --global user.name "GitHub Actions"
	git checkout -b dist

	# Remove all existing files except the .gitignore file
	find . -type f ! -path "./docs/" ! -path "./.git/" -exec git rm --cached {} +
	git checkout HEAD -- .gitignore

	# Copy only the content of the HTML folder to the root of the repository
	cp -r docs/build/html/. .

	# Remove the docs folder
	rm -rf docs

	# Add all files in the root directory for commit
	git add .

	# Commit and push changes
	git commit -m "Deploy Sphinx documentation to dist branch"
	git push origin dist

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