Stop whitebox from downloading during runtime

Dockerfile

@@ -10,7 +10,7 @@ ENV taudemDir=$depDir/taudem/bin
 ENV taudemDir2=$depDir/taudem_accelerated_flowDirections/taudem/build/bin
 
 # remove reference to missing repo
-RUN rm /etc/apt/sources.list.d/apache-arrow.sources
+# RUN rm /etc/apt/sources.list.d/apache-arrow.sources
 
 RUN apt-get update && apt-get install -y git && rm -rf /var/lib/apt/lists/*
 
@@ -70,20 +70,12 @@ RUN mkdir -p $depDir
 COPY --from=builder $depDir $depDir
 
 # remove reference to missing repo
-RUN rm /etc/apt/sources.list.d/apache-arrow.sources
-
-RUN apt-get update --fix-missing && apt-get install -y openjdk-21-jdk && rm -rf /var/lib/apt/lists/*
-RUN apt update --fix-missing
-
-# An older version of openjdk still exists on the file system but was never cleaned up
-# After research, we realized, it just needs file cleanup. Leaving it there is triggering security warnings
-# RUN apt-get remove -y openjdk-17-jdk (not installed, just residue left)
-RUN rm -rf ./usr/lib/jvm/*java-1.17* && \
- rm -rf ./usr/lib/jvm/.java-1.17* && \
- rm -rdf ./usr/lib/jvm/java-17*
+# RUN rm /etc/apt/sources.list.d/apache-arrow.sources
 
+# RUN apt-get update --fix-missing && apt-get install -y openjdk-19-jdk && rm -rf /var/lib/apt/lists/*
 
-RUN DEBIAN_FRONTEND=noninteractive TZ=Etc/UTC apt install -y p7zip-full python3-pip time mpich parallel libgeos-dev expect tmux rsync tzdata
+RUN apt update --fix-missing
+RUN DEBIAN_FRONTEND=noninteractive TZ=Etc/UTC apt install -y p7zip-full python3-pip time mpich parallel libgeos-dev expect tmux rsync tzdata wget
 
 RUN apt auto-remove
 
@@ -99,9 +91,7 @@ ENV PYTHONUNBUFFERED=TRUE
 
 ## ADD TO PATHS ##
 ENV PATH="$projectDir:${PATH}"
-#ENV PATH=${PATH}:$projectDir:$projectDir/$srcDir:$projectDir/tools
-# Jul 17, 2024: Even though PYTHONPATH isn't used, it still seems to want it.
-ENV PYTHONPATH=${PATH}:$srcDir:$projectDir/tools
+ENV PYTHONPATH=${PYTHONPATH}:$srcDir:$projectDir/unit_tests:$projectDir/tools
 
 ## install python 3 modules ##
 
@@ -120,12 +110,10 @@ RUN pip3 install pipenv==2024.0.1 && PIP_NO_CACHE_DIR=off pipenv install --syste
 # We download and unzip it to the same file folder that pip deployed the whitebox library.
 # Whitebox also attempts to always download a folder called testdata regardless of use.
 # We added an empty folder to fake out whitebox_tools.py so it doesn't try to download the folder
-
-# RUN wbox_path=/usr/local/lib/python3.10/dist-packages/whitebox/WBT && \
-# wget -P $wbox_path https://www.whiteboxgeo.com/WBT_Linux/WhiteboxTools_linux_musl.zip && \
-# unzip -o $wbox_path/WhiteboxTools_linux_musl.zip -d $wbox_path && \
-# cp $wbox_path/whitebox_tools $wbox_path && \
-# mkdir $wbox_path/testdata
+ENV WBT_PATH=/usr/local/lib/python3.10/dist-packages/whitebox/WBT
+RUN wget -P $WBT_PATH https://www.whiteboxgeo.com/WBT_Linux/WhiteboxTools_linux_musl.zip && \
+ unzip -o $WBT_PATH/WhiteboxTools_linux_musl.zip -d $WBT_PATH && \
+ cp $WBT_PATH/WhiteboxTools_linux_amd64/WBT/whitebox_tools $WBT_PATH
 # ----------------------------------
 
 ## RUN UMASK TO CHANGE DEFAULT PERMISSIONS ##

Pipfile

@@ -50,7 +50,7 @@ seaborn = "==0.12.2"
 tables = "==3.8.0"
 tqdm = "==4.66.3"
 urllib3 = "==1.26.19"
-whitebox = "==2.3.4"
+whitebox = "==2.3.5"
 xarray = "==2024.6.0"
 zarr = "==2.18.0"