This set of batch files is used to create standard directory tree for research projects. Batch files are provided to make standardized nested directories in accordance with the ISA Abstract Model levels (Investigation/Study/Assay).
Installation:
- Download (zip file) or clone the repository from NIB GitHub repository.
- Extract files into your local pISA projects directory (ignore or delete .git-related files).
- User instructions are in the INSTRUCTIONS file.
Additional info:
- Files in the
docfolder - Files at http://ablejec.nib.si/doc
Links:
Linked resources:
- R support for pISA-tree
- R interface for SEEK API (connection to FAIRDOMHub)
- Community effort pISA-tree assay-types - enhanced with pISA-tree->ISA-Tab validation files
Find out even more about pISA-tree from
đź–‹ blog post Manage life science research data with pISA-tree
📋 scientific data article Petek, M., Zagorščak, M., Blejec, A. et al. pISA-tree - a data management framework for life science research projects using a standardised directory tree. Sci Data 9, 685 (2022). https://doi.org/10.1038/s41597-022-01805-5
