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Fix spelling of param.
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mbjones committed Dec 1, 2020
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2 changes: 1 addition & 1 deletion vignettes/Community_Stability_Metrics.Rmd
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Expand Up @@ -122,7 +122,7 @@ kable(KNZ_A1_variance_ratio)

- `cyclic_shift` returns an S3 object of test statistics from a user-specified function when applied to a null community generated via a cyclic shift permutation. It requires a dataframe with a `species.var`, `time.var` and `abundance.var` column, and optional `replicate.var` column. The user-specified function should operate on a community matrix (e.g., `cov`).

The length of the "out" param in the object is the number of null iterations as specified by `bootnumber`). If multiple replicates are specified, null values are averaged among replicates for each iteration, but a different cyclic shift permutation is applied to each replicate within an iteration.
The length of the "out" parameter in the object is the number of null iterations as specified by `bootnumber`). If multiple replicates are specified, null values are averaged among replicates for each iteration, but a different cyclic shift permutation is applied to each replicate within an iteration.

- `confint` returns the confidence intervals from the S3 object produced by `cyclic_shift`.

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