Popular repositories Loading

1. cellpose cellpose Public

   a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

   Python 1.6k 453

2. Kilosort Kilosort Public

   Fast spike sorting with drift correction

   Python 526 264

3. suite2p suite2p Public

   cell detection in calcium imaging recordings

   Jupyter Notebook 378 253

4. rastermap rastermap Public

   a visualization method for neural data

   Python 222 50

5. facemap facemap Public

   Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes singular value decomposition (SVD) of behavioral videos.

   Python 165 64

6. stringer-pachitariu-et-al-2018b stringer-pachitariu-et-al-2018b Public

   Responses of 10,000 neurons to 2,800 natural images

   MATLAB 68 21