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  1. miom miom Public

    Constraint-based modeling of metabolism using Mixed Integer Optimization

    Python 11 2

  2. dexom dexom Public

    Diversity-based enumeration of optimal context-specific metabolic networks

    MATLAB 5 1

  3. phnmnl-FingerprintClustering phnmnl-FingerprintClustering Public

    Performs unsupervised clustering among a metabolic network from a fingerprint

    R 1

  4. met4j met4j Public

    Met4J is an open-source Java library dedicated to the structural analysis of metabolic networks. It also came with a toolbox gathering CLI for several analyses relevant to metabolism-related research.

    Java 1

  5. dexom-python dexom-python Public

    diversity-based enumeration of optimal context-specific metabolic networks using the cobrapy library

    Python 1

  6. MetaboliteIDConverter MetaboliteIDConverter Public archive

    Forked from bmerlet90/MetaboliteIDConverter

    Java

Repositories

Showing 10 of 16 repositories
  • met4j Public

    Met4J is an open-source Java library dedicated to the structural analysis of metabolic networks. It also came with a toolbox gathering CLI for several analyses relevant to metabolism-related research.

    MetExplore/met4j’s past year of commit activity
    Java 1 0 0 0 Updated May 30, 2024
  • dexom-python Public

    diversity-based enumeration of optimal context-specific metabolic networks using the cobrapy library

    MetExplore/dexom-python’s past year of commit activity
    Python 1 GPL-3.0 0 0 0 Updated Mar 12, 2024
  • MetExploreViz Public
    MetExplore/MetExploreViz’s past year of commit activity
    JavaScript 0 GPL-3.0 0 0 0 Updated Oct 13, 2022
  • metexplore2_maintenance Public
    MetExplore/metexplore2_maintenance’s past year of commit activity
    HTML 0 0 2 0 Updated Jun 23, 2022
  • miom Public

    Constraint-based modeling of metabolism using Mixed Integer Optimization

    MetExplore/miom’s past year of commit activity
    Python 11 GPL-3.0 2 8 0 Updated Mar 22, 2022
  • dexom Public

    Diversity-based enumeration of optimal context-specific metabolic networks

    MetExplore/dexom’s past year of commit activity
    MATLAB 5 GPL-3.0 1 2 0 Updated Jul 2, 2021
  • dexom-evaluation Public

    DEXOM submodule with data for evaluation

    MetExplore/dexom-evaluation’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Nov 18, 2020
  • cobratoolbox-lib Public

    COBRA Toolbox without submodules and minor modifications to improve reproducibility

    MetExplore/cobratoolbox-lib’s past year of commit activity
    MATLAB 0 0 0 0 Updated Jul 21, 2020
  • phnmnl-FingerprintClustering Public

    Performs unsupervised clustering among a metabolic network from a fingerprint

    MetExplore/phnmnl-FingerprintClustering’s past year of commit activity
    R 1 0 0 0 Updated Jul 26, 2018
  • phnmnl-PathwayEnrichment Public

    pathway enrichment tool for Docker containerization into Galaxy PhenoMeNal instance

    MetExplore/phnmnl-PathwayEnrichment’s past year of commit activity
    Java 0 0 0 0 Updated Jul 26, 2018
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