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Releases: MannLabs/alphapeptdeep

Release version 0.2.0

30 Sep 11:56
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0.2.0
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Release version 0.2.0 
update HLA nbs
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Release version 0.1.7

14 Sep 15:22
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Release version 0.1.7 
badge for pretrain-models
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Release version 0.1.6

12 Sep 13:02
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0.1.6
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Release version 0.1.6 
Merge pull request #56 from MannLabs/development

Bump version: 0.1.5 → 0.1.6
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Release version 0.1.5

09 Sep 22:32
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Release version 0.1.5 
Merge branch 'development' into main
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Release version 0.1.4

29 Jul 16:58
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0.1.4
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Release version 0.1.4 
Merge pull request #52 from MannLabs/development

Development
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Release version 0.1.3

22 Jul 07:50
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0.1.3
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Release version 0.1.3 
add missing pkg: lxml
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Release version 0.1.2

16 Jul 05:25
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0.1.2
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Release version 0.1.2 
release installer
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Pre-trained models

28 Jun 13:30
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pre-trained-models
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Pre-trained models

Pre-trained MS2/RT/CCS models

Change log:

[2022-11-28] For timsTOF data, fragment intensities for training are no longer extracted from MaxQuant's msms.txt. We extracted fragments of AlphaPept PSMs against the ms_data.hdf, this should be more stable than msms.txt for timsTOF. The previous model is still available on https://datashare.biochem.mpg.de/s/RDSZlAnCRvxfLfk.

[2024-06-29] Add the pretrained LSTM-based HLA-I model (hla_model.zip) for peptide binding prediciton.

Assets 4
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