Skip to content

Issues: MannLabs/alphapeptdeep

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

24 Open 59 Closed
24 Open 59 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Translation for speclib.tsv fails while handling modifications
#218 opened Nov 28, 2024 by JuliaS92
@C/N-term mods do not create in silico modified peptides bug Something isn't working
#214 opened Nov 6, 2024 by Shinya-Watanabe
Why is "rescore" is not available as a task_choice
#212 opened Oct 8, 2024 by mhamaneh
1
Mod site for C-term modifications question Further information is requested
#209 opened Sep 24, 2024 by mo-sameh
IndexError: positional indexers are out-of-bounds,May kind people be blessed with life-long peace.
#207 opened Aug 28, 2024 by yanzhou-boy
Requirement to replace our pretrained RT model
#204 opened Aug 23, 2024 by jalew188
KeyError: 'Modified.Sequence'
#203 opened Aug 23, 2024 by yanzhou-boy
1
About zipfile.BadZipFile: File is not a zipfile problem
#200 opened Aug 19, 2024 by yanzhou-boy
1
Finetune a pretrained model on a new dataset without using mode_x to optimize performance for the new target.
#199 opened Aug 18, 2024 by shamimshahcheraghi
1
Can you issue a GUI guide
#198 opened Aug 16, 2024 by yanzhou-boy
FutureWarning: torch.load changed weights_only=False to weights_only=True
#195 opened Aug 12, 2024 by jalew188
The epoch parameter in scheduler.step() was not necessary and is being deprecated where possible
#194 opened Aug 10, 2024 by jalew188
@mo-sameh
1
Custom LR scheduler not supported
#191 opened Aug 1, 2024 by ErikHartman
1
Tutorial: speclib
#187 opened Jul 17, 2024 by jalew188
@jalew188
A problem about the GUI page
#185 opened Jul 16, 2024 by jalew188
Tutorial: immunopeptidomics
#183 opened Jun 28, 2024 by jalew188
@wahlema
Copy transformer code from huggingface due to too many breaking changes
#178 opened Jun 25, 2024 by jalew188
@jalew188
peptdeep bug on linux - destination is read-only
#177 opened Jun 17, 2024 by timheymann
@GeorgWa
ModelManager.predict_all() modifies dataframe in place
#163 opened May 7, 2024 by GeorgWa
@jalew188
1
Supported fragmentlosstype?
#153 opened Apr 15, 2024 by hxxhust163
4
Missing the documentation on how to use the GUI to train a model for in-silico prediction
#149 opened Mar 19, 2024 by michaelsteidel86
3
Transfer learning to refine predicted library
#145 opened Feb 22, 2024 by snsipe
3
Library translate tsv: IndexError: index 4 is out of bounds for axis 1 with size 4
#142 opened Feb 6, 2024 by J-Burgess
1
Tuning MS2 by low-quality fragment matches on all DIA PSMs at apex_rt resulted in low-quality MS2 prediction
#124 opened Dec 31, 2023 by jalew188
1
ProTip! Updated in the last three days: updated:>2024-12-21.