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release 1.7.1 #257

Merged
merged 121 commits into from
Jul 5, 2024
Merged

release 1.7.1 #257

merged 121 commits into from
Jul 5, 2024

Commits on Jun 15, 2024

  1. Add plotting

    @GeorgWa
    GeorgWa committed Jun 15, 2024
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  2. target decoy fdr base

    @GeorgWa
    GeorgWa committed Jun 15, 2024
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Commits on Jun 17, 2024

  1. #230: add _run_tests.yml workflow

    @mschwoer
    mschwoer committed Jun 17, 2024
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  2. #230: add branch-checks.yaml

    @mschwoer
    mschwoer committed Jun 17, 2024
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  3. #230: adapt pip_installation.yml to use _branch-checks

    @mschwoer
    mschwoer committed Jun 17, 2024
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  4. #230: apply formatting bt pre-commit hook

    @mschwoer
    mschwoer committed Jun 17, 2024
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  5. #230: bump ruff pre-commit to 0.4.9

    @mschwoer
    mschwoer committed Jun 17, 2024
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  6. #230: comments

    @mschwoer
    mschwoer committed Jun 17, 2024
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  7. update metrics datastructure

    @mo-sameh
    mo-sameh committed Jun 17, 2024
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  8. fix test_outputaccumulator import

    @mo-sameh
    mo-sameh committed Jun 17, 2024
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  9. adapted the test_finetunemetrics

    @mo-sameh
    mo-sameh committed Jun 17, 2024
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  10. formating

    @mo-sameh
    mo-sameh committed Jun 17, 2024
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  11. #230: add precommit rule E

    @mschwoer
    mschwoer committed Jun 17, 2024
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  12. #230: apply ruff unsafe fixes for rule E

    @mschwoer
    mschwoer committed Jun 17, 2024
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  13. #230: fix ruff rule E: Module level import not at top of file

    @mschwoer
    mschwoer committed Jun 17, 2024
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  14. #230: fix rest of ruff rule E

    @mschwoer
    mschwoer committed Jun 17, 2024
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Commits on Jun 18, 2024

  1. Merge pull request #231 from MannLabs/230-basic-linting 

    230 basic linting
    @mschwoer
    mschwoer authored Jun 18, 2024
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  2. Merge pull request #233 from MannLabs/230-basic-linting-rule-e 

    230 basic linting rule e
    @mschwoer
    mschwoer authored Jun 18, 2024
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  3. #230: autofixes ruff rule F

    @mschwoer
    mschwoer committed Jun 18, 2024
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  4. #230: unsafe autofixes ruff rule F

    @mschwoer
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  5. #230: ruff rule F: mark unused variables as potential bugs

    @mschwoer
    mschwoer committed Jun 18, 2024
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  6. #230: ruff rule F: manual fixes

    @mschwoer
    mschwoer committed Jun 18, 2024
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  7. #230: ruff rule UP: auto fixes

    @mschwoer
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  8. #230: ruff rule UP: unsafe auto fixes

    @mschwoer
    mschwoer committed Jun 18, 2024
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  9. #230: remove unused variables

    @mschwoer
    mschwoer committed Jun 18, 2024
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  10. #230: remove unused variables

    @mschwoer
    mschwoer committed Jun 18, 2024
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  11. fix requested changes

    @mo-sameh
    mo-sameh committed Jun 18, 2024
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Commits on Jun 19, 2024

  1. #230: ruff rule UP: auto fixes

    @mschwoer
    mschwoer committed Jun 19, 2024
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  2. #230: ruff rule UP: unsafe auto fixes

    @mschwoer
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  3. Merge remote-tracking branch 'origin/230-basic-linting-rule-up' into … 

    …230-basic-linting-rule-up
    @mschwoer
    mschwoer committed Jun 19, 2024
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  4. #230: ruff rule SIM: auto fixes

    @mschwoer
    mschwoer committed Jun 19, 2024
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  5. #230: ruff rule SIM: unsafe auto fixes

    @mschwoer
    mschwoer committed Jun 19, 2024
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  6. #230: ruff rule SIM: manual fixes

    @mschwoer
    mschwoer committed Jun 19, 2024
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  7. include fixes

    @GeorgWa
    GeorgWa committed Jun 19, 2024
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  8. Merge pull request #232 from MannLabs/transferleanring-metrics-datast… 

    …ructure

Change transferleanring metrics datastructure
    @GeorgWa
    GeorgWa authored Jun 19, 2024
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  9. fix tests

    @GeorgWa
    GeorgWa committed Jun 19, 2024
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  10. add python matrix version

    @GeorgWa
    GeorgWa committed Jun 19, 2024
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  11. set default to 3.11

    @GeorgWa
    GeorgWa committed Jun 19, 2024
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  12. add 3.12

    @GeorgWa
    GeorgWa committed Jun 19, 2024
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  13. set minimum version to 3.10

    @GeorgWa
    GeorgWa committed Jun 19, 2024
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  14. just norway things

    @GeorgWa
    GeorgWa committed Jun 19, 2024
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  15. add badge

    @GeorgWa
    GeorgWa committed Jun 19, 2024
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  16. add python version to install script

    @GeorgWa
    GeorgWa committed Jun 19, 2024
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  17. typo

    @GeorgWa
    GeorgWa committed Jun 19, 2024
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  18. Merge pull request #235 from MannLabs/230-basic-linting-rule-f 

    230 basic linting rule f
    @mschwoer
    mschwoer authored Jun 19, 2024
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  19. Merge pull request #236 from MannLabs/230-basic-linting-rule-f-remove… 

    …-unused

230 basic linting rule f remove unused
    @mschwoer
    mschwoer authored Jun 19, 2024
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  20. Merge branch 'development' into 230-basic-linting-rule-up

    @mschwoer
    mschwoer authored Jun 19, 2024
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  21. Merge pull request #239 from MannLabs/add-python-matrix 

    CHORE fix supported python version 3.10 - 3.12
    @GeorgWa
    GeorgWa authored Jun 19, 2024
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  22. Merge branch 'development' into fdr-update

    @GeorgWa
    GeorgWa committed Jun 19, 2024
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  23. apply linting

    @GeorgWa
    GeorgWa committed Jun 19, 2024
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  24. #230: fix merge

    @mschwoer
    mschwoer committed Jun 19, 2024
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  25. linting

    @GeorgWa
    GeorgWa committed Jun 19, 2024
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  26. #230: ruff rule SIM: auto fixes

    @mschwoer
    mschwoer committed Jun 19, 2024
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  27. #230: ruff rule SIM: unsafe auto fixes

    @mschwoer
    mschwoer committed Jun 19, 2024
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  28. #230: ruff rule SIM: manual fixes

    @mschwoer
    mschwoer committed Jun 19, 2024
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  29. Merge remote-tracking branch 'origin/230-basic-linting-rule-sim' into… 

    … 230-basic-linting-rule-sim
    @mschwoer
    mschwoer committed Jun 19, 2024
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  30. #230: simplify expression

    @mschwoer
    mschwoer committed Jun 19, 2024
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  31. Merge pull request #229 from MannLabs/fdr-update 

    FEAT modular FDR core implementation
    @GeorgWa
    GeorgWa authored Jun 19, 2024
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  32. Merge remote-tracking branch 'refs/remotes/origin/development' into 2… 

    …30-basic-linting-rule-up
    @mschwoer
    mschwoer committed Jun 19, 2024
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  33. #230: auto fixes

    @mschwoer
    mschwoer committed Jun 19, 2024
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  34. #230: ruff rule SIM: auto fixes

    @mschwoer
    mschwoer committed Jun 19, 2024
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  35. #230: ruff rule SIM: unsafe auto fixes

    @mschwoer
    mschwoer committed Jun 19, 2024
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  36. #230: ruff rule SIM: manual fixes

    @mschwoer
    mschwoer committed Jun 19, 2024
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  37. #230: simplify expression

    @mschwoer
    mschwoer committed Jun 19, 2024
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  38. Merge remote-tracking branch 'origin/230-basic-linting-rule-sim' into… 

    … 230-basic-linting-rule-sim
    @mschwoer
    mschwoer committed Jun 19, 2024
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  39. #230: auto fixes

    @mschwoer
    mschwoer committed Jun 19, 2024
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  40. #230: ruff rule B: unsafe auto fixes

    @mschwoer
    mschwoer committed Jun 19, 2024
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  41. #230: ruff rule B: manual fixes

    @mschwoer
    mschwoer committed Jun 19, 2024
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  42. Merge pull request #237 from MannLabs/230-basic-linting-rule-up 

    230 basic linting rule up
    @mschwoer
    mschwoer authored Jun 19, 2024
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  43. Merge pull request #238 from MannLabs/230-basic-linting-rule-sim 

    230 basic linting rule sim
    @mschwoer
    mschwoer authored Jun 19, 2024
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  44. #230: ruff rule B006: auto fixes

    @mschwoer
    mschwoer committed Jun 19, 2024
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  45. Merge pull request #241 from MannLabs/230-basic-linting-rule-b2 

    230 basic linting rule b2
    @mschwoer
    mschwoer authored Jun 19, 2024
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  46. Merge pull request #242 from MannLabs/230-basic-linting-rule-b-mutable 

    #230: ruff rule B006: auto fixes
    @mschwoer
    mschwoer authored Jun 19, 2024
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Commits on Jun 20, 2024

  1. feat: add test split

    @mo-sameh
    mo-sameh committed Jun 20, 2024
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  2. format

    @mo-sameh
    mo-sameh committed Jun 20, 2024
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  3. #230: ruff rule I: apply auto fixes

    @mschwoer
    mschwoer committed Jun 20, 2024
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  4. CHORE: improve install docs

    @mschwoer
    mschwoer committed Jun 20, 2024
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  5. CHORE: revert not using cache in install

    @mschwoer
    mschwoer committed Jun 20, 2024
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  6. CHORE: add pre-commit to docs

    @mschwoer
    mschwoer committed Jun 20, 2024
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  7. CHORE: add release notes template

    @mschwoer
    mschwoer committed Jun 20, 2024
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  8. CHORE: let pre-commit do auto-fixes

    @mschwoer
    mschwoer committed Jun 20, 2024
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  9. Merge pull request #244 from MannLabs/230-basic-linting-rule-i2 

    230 basic linting rule i2
    @mschwoer
    mschwoer authored Jun 20, 2024
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  10. CHORE: review comnents

    @mschwoer
    mschwoer committed Jun 20, 2024
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  11. rename environment name in profile.js

    @mschwoer
    mschwoer committed Jun 20, 2024
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  12. #230: ruff rule B905: add strict keyword to zip

    @mschwoer
    mschwoer committed Jun 20, 2024
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  13. #230: fix tests

    @mschwoer
    mschwoer committed Jun 20, 2024
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Commits on Jun 21, 2024

  1. Merge pull request #245 from MannLabs/add-conda-to-docu 

    Add conda to docu
    @mschwoer
    mschwoer authored Jun 21, 2024
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  2. #230: no 'strict' on numba zips

    @mschwoer
    mschwoer committed Jun 21, 2024
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  3. Update train.py

    @mo-sameh
    mo-sameh committed Jun 21, 2024
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  4. Merge branch 'development' into add-test-split-to-transferlearning

    @mo-sameh
    mo-sameh committed Jun 21, 2024
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  5. Adapted gui and output transform to new settings

    @mo-sameh
    mo-sameh committed Jun 21, 2024
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  6. Merge pull request #243 from MannLabs/transferleanring-metrics-datast… 

    …ructure

Add test split
    @GeorgWa
    GeorgWa authored Jun 21, 2024
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Commits on Jun 24, 2024

  1. Merge pull request #246 from MannLabs/230-linting-zip 

    #230: ruff rule B905: add strict keyword to zip
    @GeorgWa
    GeorgWa authored Jun 24, 2024
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  2. fix warnings for scheduler step and early stopping

    @mo-sameh
    mo-sameh committed Jun 24, 2024
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Commits on Jun 25, 2024

  1. Merge pull request #252 from MannLabs/fix-transferlearning-warnings 

    fix warnings for scheduler step and early stopping
    @GeorgWa
    GeorgWa authored Jun 25, 2024
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  2. CHORE: raise on output error

    @mschwoer
    mschwoer committed Jun 25, 2024
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  3. add raw name to transfer lib

    @GeorgWa
    GeorgWa committed Jun 25, 2024
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  4. overwrite old profile

    @GeorgWa
    GeorgWa committed Jun 25, 2024
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Commits on Jun 26, 2024

  1. fix #250

    @GeorgWa
    GeorgWa committed Jun 26, 2024
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  2. Merge pull request #256 from MannLabs/readme-update 

    FIX Readme
    @GeorgWa
    GeorgWa authored Jun 26, 2024
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  3. Merge pull request #254 from MannLabs/accumulator-raw-name 

    Include raw name in transfer lib
    @GeorgWa
    GeorgWa authored Jun 26, 2024
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  4. Merge pull request #253 from MannLabs/raise-on-output-error 

    CHORE: raise on output error
    @GeorgWa
    GeorgWa authored Jun 26, 2024
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  5. BUG: fix issue with zip strict & numba

    @mschwoer
    mschwoer committed Jun 26, 2024
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  6. Merge pull request #258 from MannLabs/fix-zip 

    BUG: fix issue with zip strict & numba
    @GeorgWa
    GeorgWa authored Jun 26, 2024
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  7. remove numba strict true

    @GeorgWa
    GeorgWa committed Jun 26, 2024
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  8. Merge pull request #259 from MannLabs/remove-numba-strict 

    FIX remove numba strict true
    @GeorgWa
    GeorgWa authored Jun 26, 2024
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Commits on Jul 1, 2024

  1. #261 install MANIFEST.in in docker container

    @dnusinow
    dnusinow committed Jul 1, 2024
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Commits on Jul 3, 2024

  1. Merge pull request #262 from dnusinow/development 

    #261 install MANIFEST.in in docker container
    @mschwoer
    mschwoer authored Jul 3, 2024
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  2. Merge pull request #255 from MannLabs/profile-fix 

    FIX Overwrite old profile
    @GeorgWa
    GeorgWa authored Jul 3, 2024
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Commits on Jul 4, 2024

  1. Bump version: 1.7.0 → 1.7.1

    @GeorgWa
    GeorgWa committed Jul 4, 2024
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  2. BUG: fix numpy dependency to < 2

    @mschwoer
    mschwoer committed Jul 4, 2024
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  3. BUG: adapt dependencies test

    @mschwoer
    mschwoer committed Jul 4, 2024
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  4. BUG: delete caches if e2e tests fail

    @mschwoer
    mschwoer committed Jul 4, 2024
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  5. BUG: bump python version in Dockerfile

    @mschwoer
    mschwoer committed Jul 4, 2024
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  6. CHORE: print pip environment

    @mschwoer
    mschwoer committed Jul 4, 2024
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  7. Merge pull request #263 from MannLabs/fix_loose_tests 

    Fix loose tests and Docker issues
    @GeorgWa
    GeorgWa authored Jul 4, 2024
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  8. BUG: fix release building

    @mschwoer
    mschwoer committed Jul 4, 2024
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  9. Merge pull request #264 from MannLabs/fix_loose_tests 

    BUG: fix release building
    @mschwoer
    mschwoer authored Jul 4, 2024
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  10. fix release

    @GeorgWa
    GeorgWa committed Jul 4, 2024
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  11. update build script

    @GeorgWa
    GeorgWa committed Jul 4, 2024
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Commits on Jul 5, 2024

  1. Merge pull request #265 from MannLabs/fix-release 

    Simplified pyinstaller script
    @GeorgWa
    GeorgWa authored Jul 5, 2024
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