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Linting iii#235

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mschwoer merged 17 commits into
developmentfrom
linting_III
Jan 9, 2025
Merged

Linting iii#235
mschwoer merged 17 commits into
developmentfrom
linting_III

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@mschwoer

@mschwoer mschwoer commented Nov 15, 2024

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manual fixes for a first bunch of linting rules ..
see individual commits

edit: made all start imports in notebooks explicit as tests started to fail due to removal of os from some readers

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@GeorgWa GeorgWa left a comment

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LGTM
I think the Path() / Path() syntax is quite ugly and missuses python magic methods :D but if the community thinks this is the way to go I'm happy to do so.
I'm also not a big fan of ther new read only .to_numpy() buit I guess I have to live with this.

Comment thread alphabase/psm_reader/alphapept_reader.py
Comment thread alphabase/psm_reader/maxquant_reader.py
Comment thread alphabase/psm_reader/sage_reader.py
Comment thread alphabase/spectral_library/reader.py
Base automatically changed from linting_II to development November 22, 2024 09:51
@mschwoer mschwoer merged commit 4e2b51f into development Jan 9, 2025
@mschwoer mschwoer deleted the linting_III branch January 9, 2025 08:02
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2 participants