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When I download the VCF file locally via Open GWAS and then read it using the readVcf function, the number of SNPs extracted using the extract_outcome_data function (with snps=exposure_dat$SNP, outcomes=outcomeID) differs significantly. I have meticulously cross-checked the data, but the reason for the discrepancy remains unclear, for instance, in the case of ukb-b-6353.
The text was updated successfully, but these errors were encountered:
When I download the VCF file locally via Open GWAS and then read it using the readVcf function, the number of SNPs extracted using the extract_outcome_data function (with snps=exposure_dat$SNP, outcomes=outcomeID) differs significantly. I have meticulously cross-checked the data, but the reason for the discrepancy remains unclear, for instance, in the case of ukb-b-6353.
The text was updated successfully, but these errors were encountered: