in case of re-runs

MRCIEU · Jan 16, 2025 · 781ad18 · 781ad18
1 parent a7f2f01
commit 781ad18
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/resources/genotypes/variant_ids_bim.r b/resources/genotypes/variant_ids_bim.r
@@ -24,7 +24,7 @@ compress_alleles <- function(a) {
 # )
 
 # update orig bim
-file.copy(paste0(bfile, ".bim"), paste0(bfile, ".bim.orig"))
+file.copy(paste0(bfile, ".bim"), paste0(bfile, ".bim.orig"), overwrite = TRUE)
 bim <- data.table::fread(paste0(bfile, ".bim.orig"), nThread = nthreads)
 bim$switch <- bim$V5 > bim$V6
 temp <- bim$V5[bim$switch]