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@MIC-DKFZ

MIC-DKFZ

Division of Medical Image Computing, German Cancer Research Center (DKFZ)

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  1. nnUNet nnUNet Public

    Python 8.1k 2.3k

  2. batchgenerators batchgenerators Public

    A framework for data augmentation for 2D and 3D image classification and segmentation

    Jupyter Notebook 1.2k 229

  3. trixi trixi Public

    Manage your machine learning experiments with trixi - modular, reproducible, high fashion. An experiment infrastructure optimized for PyTorch, but flexible enough to work for your framework and you…

    Python 226 21

  4. TractSeg TractSeg Public

    Automatic White Matter Bundle Segmentation

    Python 255 79

  5. basic_unet_example basic_unet_example Public

    An example project of how to use a U-Net for segmentation on medical images with PyTorch.

    Python 153 41

  6. nnDetection nnDetection Public

    nnDetection is a self-configuring framework for 3D (volumetric) medical object detection which can be applied to new data sets without manual intervention. It includes guides for 12 data sets that …

    Python 635 119

Repositories

Showing 10 of 118 repositories
  • nnActive Public

    nnActive -- code, benchmark and results for the largest study of Active Learning for 3D Biomedical Imaging.

    MIC-DKFZ/nnActive’s past year of commit activity
    Python 17 Apache-2.0 0 0 0 Updated Mar 12, 2026
  • nnUNet Public
    MIC-DKFZ/nnUNet’s past year of commit activity
    Python 8,130 Apache-2.0 2,317 337 (1 issue needs help) 36 Updated Mar 12, 2026
  • LongiSeg Public
    MIC-DKFZ/LongiSeg’s past year of commit activity
    Python 29 Apache-2.0 4 7 0 Updated Mar 11, 2026
  • MatchPoint Public

    MatchPoint is a translational image registration framework written in C++. It offers a standardized interface to utilize several registration algorithm resources (like ITK, plastimatch, elastix) easily in a host application.

    MIC-DKFZ/MatchPoint’s past year of commit activity
    C++ 5 3 0 0 Updated Mar 10, 2026
  • VoxTell Public

    Free-Text Promptable Universal 3D Medical Image Segmentation

    MIC-DKFZ/VoxTell’s past year of commit activity
    Python 165 Apache-2.0 13 4 0 Updated Mar 9, 2026
  • batchgeneratorsv2 Public
    MIC-DKFZ/batchgeneratorsv2’s past year of commit activity
    Python 28 Apache-2.0 17 1 5 Updated Mar 9, 2026
  • deki-smpc Public
    MIC-DKFZ/deki-smpc’s past year of commit activity
    Python 4 Apache-2.0 0 0 0 Updated Mar 9, 2026
  • deki-smpc-server Public
    MIC-DKFZ/deki-smpc-server’s past year of commit activity
    Python 3 Apache-2.0 0 0 0 Updated Mar 9, 2026
  • mlarray Public

    Array format specialized for Machine Learning with Blosc2 backend and standardized metadata.

    MIC-DKFZ/mlarray’s past year of commit activity
    Python 19 MIT 0 0 0 Updated Mar 6, 2026
  • nnInteractive Public

    nnInteractive is a framework for 3D interactive segmentation, supporting intuitive prompts like points, scribbles, bounding boxes, and lasso. Trained on 120+ diverse 3D datasets, it sets a new standard in accuracy, usability, and adaptability for clinical and research applications.

    MIC-DKFZ/nnInteractive’s past year of commit activity
    Python 367 Apache-2.0 42 17 1 Updated Mar 6, 2026
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