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Change similarity metric to lin metric #34

Merged
merged 7 commits into from
Sep 25, 2020
Merged

Change similarity metric to lin metric #34

merged 7 commits into from
Sep 25, 2020

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rababerladuseladim
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Add the lin metric for semantic similarity and make it the default.

formula: (2 * info_content(mica)) / (info_content(go_id1) + info_content(go_id2)) where mica is the most informative common ancestor of go_id1 and go_id2.

The lin metric is implemented according to: Lin, Dekang. 1998. “An Information-Theoretic Definition of Similarity.” In Proceedings of the 15th International Conference on Machine Learning, 296—304.

Fixes issue #32

@rababerladuseladim rababerladuseladim changed the title Add lin metric Change similarity metric to lin metric Aug 28, 2020
@pverscha pverscha merged commit a21448b into master Sep 25, 2020
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2 participants