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LupienLab

Popular repositories

  1. SMURF SMURF Public

    Significantly Mutated Region Finder

    R 6 1

  2. MEMOS MEMOS Public

    Mutation Enrichment of Motifs

    R 2

  3. Zhou_FOXA1_ncomm_2020 Zhou_FOXA1_ncomm_2020 Public archive

    Plots, code, and analyses for Zhou et al, Nature Communications, 2020

    R 1

  4. pipeline-chromatin-accessibility pipeline-chromatin-accessibility Public

    Instructions on how to perform chromatin accessibility data pre-processing and analyses (focusing on bulk ATAC-seq)

    Python 1

  5. RepeatEnrichment RepeatEnrichment Public

    Repeat enrichment analysis

    R 1

  6. C3D C3D Public

    Forked from tahmidmehdi/C3D

    Cross Cell-type Correlation in DNaseI hypersensitivity

    Shell 1

Repositories

Showing 10 of 23 repositories
  • pipeline-chromatin-accessibility Public

    Instructions on how to perform chromatin accessibility data pre-processing and analyses (focusing on bulk ATAC-seq)

    LupienLab/pipeline-chromatin-accessibility’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Jun 21, 2024
  • ims_docker Public
    LupienLab/ims_docker’s past year of commit activity
    Python 0 MIT 1 1 2 Updated May 24, 2024
  • RepeatEnrichment Public

    Repeat enrichment analysis

    LupienLab/RepeatEnrichment’s past year of commit activity
    R 1 0 0 0 Updated Apr 23, 2024
  • MEMOS Public

    Mutation Enrichment of Motifs

    LupienLab/MEMOS’s past year of commit activity
    R 2 GPL-3.0 0 0 0 Updated Nov 15, 2023
  • DUnCAN_issues Public

    To record bugs on DuNCAN

    LupienLab/DUnCAN_issues’s past year of commit activity
    0 0 0 0 Updated Oct 2, 2023
  • CoBE_encode_ChIP-seq_pipeline Public
    LupienLab/CoBE_encode_ChIP-seq_pipeline’s past year of commit activity
    Shell 0 0 0 0 Updated Mar 27, 2023
  • 3d-reorganization-prostate-cancer Public

    Code, analysis, and results for Hawley, Zhou, et al., Cancer Research, 2021.

    LupienLab/3d-reorganization-prostate-cancer’s past year of commit activity
    HTML 0 GPL-3.0 0 0 0 Updated Mar 8, 2023
  • scMultiome Public

    From Shalini Bahl

    LupienLab/scMultiome’s past year of commit activity
    R 0 0 0 0 Updated Nov 11, 2022
  • CUT-RUN Public
    LupienLab/CUT-RUN’s past year of commit activity
    Shell 0 0 0 0 Updated Oct 5, 2022
  • cap-tcr Public

    cap-tcr

    LupienLab/cap-tcr’s past year of commit activity
    Python 0 1 0 0 Updated Jul 7, 2022
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