Feature/enhancement/docker port standardization #4
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…tion Added a provisional enhancement to the `run` target in base.mk to improve the user experience before modularizing the Docker run commands into separate functions. Now the user is notified about the container's idle state and connection details before proceeding. This sets the foundation for future improvements.
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I successfully tested an interactive simulation (2-particles example) with VMD connected to Biospring, using a local debug image built from the source of this branch. The test was performed on two separate machines: one running Biospring on Linux (Debian 12) and the other running VMD (v1.9.4a57-x86-64) on macOS Sequoia 15. |
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This PR updates all occurrences of port 3000 to port 8888 to align with the default port used by UnityMol and GROMACS for IMD (Interactive Molecular Dynamics) communication.
Dependency:
⚠️ This PR depends on another PR in the related MDDriver repository: LBT-CNRS/MDDriver#7
Please ensure that the linked PR is merged (and tested) before merging this one to avoid breaking compatibility.