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1. Core_gene_phylo Core_gene_phylo Public

   Repository for code to create bacterial core gene phylogenies

   Python 2

2. UBCG_filter UBCG_filter Public

   Script to filter UBCG alignments and output alignment containing equal number of isolates

   Python 1 1

3. Buscogeny Buscogeny Public

   Create a phylogenetic tree from BUSCO identified single copy genes

   Python 1

4. cervus_filter cervus_filter Public

   Filters cervus results for parentage matches and reports mismatches in target regions

   Python

5. GATC GATC Public

   converts 50k data to input for cervus

   Python

6. NCBI_genome_download NCBI_genome_download Public

   Creates a bash script for downloading all reference genomes of a specified genus

   Python 3