430 atof reconstruction

etc/bankdefs/hipo4/alert.json

@@ -1,5 +1,105 @@
 [
 	{
+                "name": "AHDC::Projections",
+                "group": 23000,
+                "item": 31,
+                "info": "Track Projections to ATOF",
+                "entries": [		
+                        {
+                                "name": "x_at_bar",
+                                "type": "F",
+                                "info": "x position at atof bar (middle surface) in mm"
+                        }, {
+			        "name": "y_at_bar",
+                                "type": "F",
+                                "info": "y position at atof bar (middle surface) in mm"
+                        }, {
+                                "name": "z_at_bar",
+                                "type": "F",
+                                "info": "z position at atof bar (middle surface) in mm"			    
+                        },{
+                                "name": "L_at_bar",
+                                "type": "F",
+                                "info": "path length at atof bar (inner surface) in mm" 
+                        },{
+                                "name": "L_in_bar",
+                                "type": "F",
+                                "info": "path length inside atof bar in mm"
+                        },{
+                                "name": "x_at_wedge",
+                                "type": "F",
+                                "info": "x position at atof wedge (middle surface) in mm"
+                        }, {
+                                "name": "y_at_wedge",
+                                "type": "F",
+                                "info": "y position at atof wedge (middle surface) in mm"
+                        }, {
+                                "name": "z_at_wedge",
+                                "type": "F",
+                                "info": "z position at atof wedge (middle surface) in mm"
+                        },{
+                                "name": "L_at_wedge",
+                                "type": "F",
+                                "info": "path length at atof wedge (inner surface) in mm"
+                        },{
+                                "name": "L_in_wedge",
+                                "type": "F",
+                                "info": "path length inside atof wedge in mm"
+                        }
+                ]
+        },{
+                "name": "ATOF::hits",
+                "group": 22500,
+                "item": 21,
+                "info": "Hits in ATOF",
+                "entries": [		
+                        {
+                                "name": "id",
+                                "type": "S",
+                                "info": "hit id"
+                        }, {
+			        "name": "sector",
+                                "type": "I",
+                                "info": "atof sector"
+                        }, {
+                                "name": "layer",
+                                "type": "I",
+                                "info": "atof layer"			    
+                        },{
+                                "name": "component",
+                                "type": "I",
+                                "info": "atof component" 
+                        },{
+                                "name": "time",
+                                "type": "F",
+                                "info": "time in ns"
+                        },{
+                                "name": "x",
+                                "type": "F",
+                            "info": "x position in mm"
+                        }, {
+                                "name": "y",
+                                "type": "F",
+                                "info": "y position in mm"
+                        }, {
+                                "name": "z",
+                                "type": "F",
+                                "info": "z position in mm"
+                        },{
+                                "name": "energy",
+                                "type": "F",
+                                "info": "deposited energy in MeV"
+                        },{
+                                "name": "inlength",
+                                "type": "F",
+                            "info": "path length inside the detector (from entrance to hit) in mm"
+                        },{
+			        "name": "pathlength",
+                                "type": "F",
+                                "info": "path length to the hit in mm"
+                        }
+		]
+	},{
 		"name": "AHDC::Hits",
 		"group": 23000,
 		"item": 23,

reconstruction/alert/src/main/java/org/jlab/rec/atof/Cluster/AtofCluster.java

@@ -0,0 +1,145 @@
+package org.jlab.rec.atof.cluster;
+import java.util.ArrayList;
+import org.jlab.rec.atof.hit.AtofHit;
+import org.jlab.rec.atof.hit.BarHit;
+
+/**
+ *
+ * @authors npilleux, churaman
+ */
+
+
+public class AtofCluster {
+
+    ArrayList<BarHit> bar_hits;
+    ArrayList<AtofHit> wedge_hits;
+    double x,y,z,time,energy;
+    double path_length;
+
+    public ArrayList<BarHit> getBarHits() {
+        return bar_hits;
+    }
+
+    public void setBarHits(ArrayList<BarHit> bar_hits) {
+        this.bar_hits = bar_hits;
+    }
+
+    public ArrayList<AtofHit> getWedgeHits() {
+        return wedge_hits;
+    }
+
+    public void setWedgeHits(ArrayList<AtofHit> wedge_hits) {
+        this.wedge_hits = wedge_hits;
+    }
+
+    public double getX() {
+        return x;
+    }
+
+    public void setX(double x) {
+        this.x = x;
+    }
+
+    public double getY() {
+        return y;
+    }
+
+    public void setY(double y) {
+        this.y = y;
+    }
+
+    public double getZ() {
+        return z;
+    }
+
+    public void setZ(double z) {
+        this.z = z;
+    }
+
+    public double getTime() {
+        return time;
+    }
+
+    public void setTime(double time) {
+        this.time = time;
+    }
+
+    public double getEnergy() {
+        return energy;
+    }
+
+    public void setEnergy(double energy) {
+        this.energy = energy;
+    }
+
+    public double getPath_length() {
+        return path_length;
+    }
+
+    public void setPath_length(double path_length) {
+        this.path_length = path_length;
+    }
+
+    //Cluster coordinates and time are defined as the coordinates and time of the max energy hit
+    //Can be changed later
+
+    public final void computeClusterProperties() {
+        this.energy=0;
+        double max_energy = -1;
+        AtofHit max_energy_hit = new AtofHit();
+        BarHit max_energy_barhit = new BarHit();
+
+        for(int i_wedge = 0; i_wedge<this.wedge_hits.size(); i_wedge++)
+        {
+            AtofHit this_wedge_hit = this.wedge_hits.get(i_wedge);
+            double this_energy = this_wedge_hit.getEnergy();
+            this.energy+=this_energy;
+            if(this_energy>max_energy){max_energy_hit = this_wedge_hit; max_energy = this_energy;}
+        }
+
+        for(int i_bar = 0; i_bar<this.bar_hits.size(); i_bar++)
+        {
+            BarHit this_bar_hit = this.bar_hits.get(i_bar);
+            double this_energy = this_bar_hit.getEnergy();
+            this.energy+=this_energy;
+            if(this_energy>max_energy){max_energy_barhit = this_bar_hit; max_energy = this_energy;}
+        }
+
+        if(max_energy_hit.getEnergy() > max_energy_barhit.getEnergy())
+        {
+            this.time = max_energy_hit.getTime();
+            this.x = max_energy_hit.getX();
+            this.y = max_energy_hit.getY();
+            this.z = max_energy_hit.getZ();
+            this.path_length = max_energy_hit.getPath_length();
+        }
+        else
+        {
+            this.time = max_energy_barhit.getTime();
+            this.x = max_energy_barhit.getX();
+            this.y = max_energy_barhit.getY();
+            this.z = max_energy_barhit.getZ();
+            this.path_length = max_energy_barhit.getPath_length();
+        }
+
+    }
+
+    public double getPhi()
+    {
+        return Math.atan2(this.y, this.x);
+    }
+
+    public AtofCluster(ArrayList<BarHit> bar_hits, ArrayList<AtofHit> wedge_hits) 
+	{
+		this.bar_hits = bar_hits;  
+		this.wedge_hits = wedge_hits;  
+                this.computeClusterProperties();
+        }
+
+    /**
+     * @param args the command line arguments
+     */
+    public static void main(String[] args) {
+    }
+
+}