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@JaneliaSciComp

Howard Hughes Medical Institute

GitHub organization maintained by Scientific Computing Software at HHMI's Janelia Research Campus for use by HHMI staff and external collaborators.

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  1. bigstream bigstream Public

    Tools for distributed alignment of massive images

    Jupyter Notebook 74 21

  2. NIDAQ.jl NIDAQ.jl Public

    National Instruments Data Acquisition Interface

    Julia 47 16

  3. JRCLUST JRCLUST Public

    JRCLUST

    MATLAB 34 22

  4. multifish multifish Public

    EASI-FISH analysis pipeline for spatial transcriptomics

    Jupyter Notebook 32 13

  5. xarray-multiscale xarray-multiscale Public

    scalable multiscale image pyramids in python

    Python 26 3

  6. SharkViewer SharkViewer Public

    SharkViewer is a web-based viewer for SWC neuron files. It is written entirely in JavaScript using Three.js.

    JavaScript 24 11

Repositories

Showing 10 of 264 repositories
  • jacs-storage Public

    JADE file storage services

    JaneliaSciComp/jacs-storage’s past year of commit activity
    Java 0 BSD-3-Clause 0 0 1 Updated Sep 27, 2024
  • SongExplorer Public

    deep learning for acoustic signals

    JaneliaSciComp/SongExplorer’s past year of commit activity
    Python 22 BSD-3-Clause 5 5 1 Updated Sep 27, 2024
  • G4_Display_Tools Public

    Collection of tools for the G4 LED arena displays.

    JaneliaSciComp/G4_Display_Tools’s past year of commit activity
    MATLAB 2 CC-BY-4.0 2 11 0 Updated Sep 26, 2024
  • PyWaveSurfer Public

    PyWaveSurfer is a Python package for reading WaveSurfer data files in Python.

    JaneliaSciComp/PyWaveSurfer’s past year of commit activity
    Python 9 6 1 7 Updated Sep 26, 2024
  • ShroffCelegansModels.jl Public
    JaneliaSciComp/ShroffCelegansModels.jl’s past year of commit activity
    Julia 2 MIT 0 0 32 Updated Sep 26, 2024
  • dis-utilities Public

    Utilities for Data and Information Services

    JaneliaSciComp/dis-utilities’s past year of commit activity
    JavaScript 0 BSD-3-Clause 0 30 0 Updated Sep 26, 2024
  • janelia-unity-toolkit Public

    Packages for the Unity game engine, emphasizing animal studies in VR.

    JaneliaSciComp/janelia-unity-toolkit’s past year of commit activity
    C# 15 10 5 2 Updated Sep 26, 2024
  • doi_common Public

    Library of common DOI-related functions for Python

    JaneliaSciComp/doi_common’s past year of commit activity
    Python 0 BSD-3-Clause 0 1 0 Updated Sep 25, 2024
  • neuronbridge-precompute Public

    Utilities for indexing and transferring of NeuronBridge-related files

    JaneliaSciComp/neuronbridge-precompute’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Sep 24, 2024
  • hortacloud-website Public

    Documentation website for HortaCloud

    JaneliaSciComp/hortacloud-website’s past year of commit activity
    HTML 2 BSD-3-Clause 0 0 3 Updated Sep 24, 2024
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