2024-03-24: renaming tests action

.github/workflows/tests.yml

@@ -1,7 +1,7 @@
 # This workflow will install Python dependencies, run tests and lint with a single version of Python
 # For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python
 
-name: Python application
+name: tests
 
 on:
   push:
@@ -19,7 +19,7 @@ jobs:
 
     steps:
     - uses: actions/checkout@v3
-    - name: Set up Python 3.10
+    - name: Set up Python
       uses: actions/setup-python@v3
       with:
         python-version: "3.9"

README.md

@@ -2,13 +2,13 @@
 
 ### Stitch together TCR coding nucleotide sequences from V/J/CDR3 information
 
-##### Jamie Heather | CCR @ MGH | 2023
+##### Jamie Heather | CCR @ MGH | 2024
 
-[![License](https://img.shields.io/github/license/JamieHeather/stitchr?label=license)](./LICENSE)
+[![tests](https://github.com/JamieHeather/stitchr/actions/workflows/tests.yml/badge.svg)](https://github.com/JamieHeather/stitchr/actions/workflows/tests.yml)
 [![PyPI - Version](https://img.shields.io/pypi/v/stitchr)](https://pypi.org/project/stitchr/)
 ![PyPI - Downloads](https://img.shields.io/pypi/dm/stitchr)
 [![DOI](https://img.shields.io/badge/DOI-10.1093%2Fnar%2Fgkac190-blue)](https://doi.org/10.1093/nar/gkac190)
-
+[![License](https://img.shields.io/github/license/JamieHeather/stitchr?label=license)](./LICENSE)
 
 [The documentation for stitchr can be accessed at this link: https://jamieheather.github.io/stitchr/](https://jamieheather.github.io/stitchr/)
 

src/tests/test_shared_functions.py

@@ -121,7 +121,6 @@ def test_linker_handling():
 
 
 # TODO STILL
-    # actuall call an installed stitchrdl and test (can't currently test it due to intern
     # def get_additional_genes(imgt_data, imgt_functionality):
     # def tidy_c_term(c_term_nt, skip, c_region_motifs, c_gene):
     # def determine_v_interface(cdr3aa, n_term_nuc, n_term_amino):