This repo contains a workflow I used thats based largely around the MetaWRAP wrapper, however it steps outside of this a couple of times to use updated software (MetaWRAP have now update these). Overall, the wrapper is great and easy to follow.
Some chunks in this workflow can be run directly in the terminal, but others will require submission to the HPC as they are resource intensive. HPC jobs will be denoted with (qsub). I will eventually adapt this to be used on the JCU HPC, but right now it relies on installing software and databases onto the HPC node.