remove summary metrics

Author: JackCurragh

RiboMetric/plots.py

@@ -828,6 +828,7 @@ def plot_metrics_summary(metrics_dict: dict, config: dict) -> dict:
     # for any entry in metrics_dict with a dict as value (these are where the
     # metrics are per read length) get average of the top 3 values of that dict
     for key, value in metrics_dict.items():
+        print(key, value)
         if isinstance(value, dict):
             metrics_dict[key] = sum(sorted(value.values(), reverse=True)[:3])/3
 

RiboMetric/qc.py

@@ -357,8 +357,8 @@ def annotation_mode(
         results_dict["metrics"]["ratio_cds:leader"] =\
             region_region_ratio_metric(
                 mRNA_distribution=results_dict["mRNA_distribution"],
-                region1="five_leader",
-                region2="CDS",
+                region1="CDS",
+                region2="five_leader",
             )
         results_dict["metrics"]["ratio_cds:trailer"] =\
             region_region_ratio_metric(