remove summary metrics

Author: JackCurragh

RiboMetric/modules.py

@@ -580,6 +580,7 @@ def mRNA_distribution(annotated_read_df: pd.DataFrame) -> dict:
             mRNA_distribution_dict["global"][mRNA_category] += value
         else:
             mRNA_distribution_dict["global"][mRNA_category] = value
+    print(mRNA_distribution_dict)
     return mRNA_distribution_dict
 
 

update_git.sh

@@ -7,7 +7,7 @@ pip install git+https://github.com/JackCurragh/RiboMetric.git
 
 # RiboMetric run -b Calviello16/Calviello.transcriptome.sorted.bam -a Calviello16/gencode.v45_RiboMetric.tsv -S 100000 --all --global-offset 15
 # RiboMetric run -b Calviello16/Calviello.transcriptome.sorted.bam -a Calviello16/gencode.v45_RiboMetric.tsv -S 100000 --all --offset-read-specific Calviello16/readspecific_offsets.tsv 
-RiboMetric run -b Calviello16/Calviello.transcriptome.sorted.bam -a Calviello16/gencode.v45_RiboMetric.tsv -S 100000000 --all --offset-calculation-method ribowaltz -o test/
+RiboMetric run -b Calviello16/Calviello.transcriptome.sorted.bam -a Calviello16/gencode.v45_RiboMetric.tsv -S 100000 --all --offset-calculation-method ribowaltz -o test/
 # RiboMetric run -b Calviello16/Calviello.transcriptome.sorted.bam -a Calviello16/gencode.v45_RiboMetric.tsv -S 100000000 --all --offset-calculation-method tripsviz -o test/tripsviz
 # RiboMetric run -b Calviello16/Calviello.transcriptome.sorted.bam -a Calviello16/gencode.v45_RiboMetric.tsv -S 100000000 --all --offset-calculation-method changepoint -o test/changepoint