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Simplify PDB reader and add docs #663

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Description of work

  • Clean up MinimalPDBReader.
  • Turn MinimalPDBReader.find_atoms into a generator.

Fixes
General cleanup of MinimalPDBReader

To test
Should be no functional changes.

@oerc0122 oerc0122 added the styling Any issue related to styling label Feb 11, 2025
@oerc0122 oerc0122 self-assigned this Feb 11, 2025
@oerc0122 oerc0122 force-pushed the simplify-pdb-reader branch 2 times, most recently from 62a5040 to 8a0d3b9 Compare February 11, 2025 14:13
Co-authored-by: Jacob Wilkins <[email protected]>
Signed-off-by: Maciej Bartkowiak <[email protected]>
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After this one change it is working the same as the main branch.

@oerc0122
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After this one change it is working the same as the main branch.

Will add the test to ensure it keeps working before merging though

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Gromacs test added in #671

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