- Add ruff format linting to workflows

- Run ruff format

.github/workflows/lint.yml

@@ -25,14 +25,14 @@ jobs:
           src: "./MDANSE/Src"
           args: "check"
 
-  lint-mdanse-gui:
+  lint_format_ruff_gui:
     runs-on: ubuntu-latest
     steps:
       - uses: actions/checkout@v4
-      - uses: psf/black@stable
+      - uses: astral-sh/ruff-action@v3
         with:
-          options: "--check --verbose"
-          src: "MDANSE_GUI/Src"
+          src: "./MDANSE_GUI/Src"
+          args: "format --check"
 
   lint_check_ruff_gui:
     runs-on: ubuntu-latest

MDANSE_GUI/Src/MDANSE_GUI/InputWidgets/AtomSelectionWidget.py

@@ -190,7 +190,6 @@ def left_widgets(self) -> list[QWidget]:
         self.combo_boxes = []
 
         for k, v in self.settings.items():
-
             if isinstance(v, bool):
                 check_layout = QHBoxLayout()
                 checkbox = QCheckBox()

MDANSE_GUI/Src/MDANSE_GUI/InputWidgets/CorrelationFramesWidget.py

@@ -22,7 +22,6 @@
 
 
 class CorrelationFramesWidget(FramesWidget):
-
     def __init__(self, *args, **kwargs):
         super().__init__(*args, **kwargs)
 

MDANSE_GUI/Src/MDANSE_GUI/InputWidgets/DerivativeOrderWidget.py

@@ -29,7 +29,6 @@
 
 
 class DerivativeOrderWidget(WidgetBase):
-
     def __init__(self, *args, **kwargs):
         super().__init__(*args, layout_type="QHBoxLayout", **kwargs)
         self._field = QSpinBox(self._base)

MDANSE_GUI/Src/MDANSE_GUI/InputWidgets/DistHistCutoffWidget.py

@@ -18,7 +18,6 @@
 
 
 class DistHistCutoffWidget(RangeWidget):
-
     def __init__(self, *args, **kwargs):
         super().__init__(*args, **kwargs)
 

MDANSE_GUI/Src/MDANSE_GUI/InputWidgets/HDFTrajectoryWidget.py

@@ -22,7 +22,6 @@
 
 
 class HDFTrajectoryWidget(WidgetBase):
-
     def __init__(self, *args, **kwargs):
         super().__init__(*args, **kwargs)
         source_object = kwargs.get("source_object", None)

MDANSE_GUI/Src/MDANSE_GUI/InputWidgets/InputFileWidget.py

@@ -25,7 +25,6 @@
 
 
 class InputFileWidget(WidgetBase):
-
     def __init__(self, *args, file_dialog=QFileDialog.getOpenFileName, **kwargs):
         super().__init__(*args, **kwargs)
         configurator = kwargs.get("configurator", None)

MDANSE_GUI/Src/MDANSE_GUI/InputWidgets/MDAnalysisCoordinateFileWidget.py

@@ -23,7 +23,6 @@
 class MDAnalysisCoordinateFileWidget(
     MultiInputFileWidget, MDAnalysisTopologyFileWidget
 ):
-
     def __init__(self, *args, file_dialog=QFileDialog.getOpenFileNames, **kwargs):
         super().__init__(
             *args,

MDANSE_GUI/Src/MDANSE_GUI/InputWidgets/MDAnalysisMDTrajTimeStepWidget.py

@@ -17,7 +17,6 @@
 
 
 class MDAnalysisMDTrajTimeStepWidget(FloatWidget):
-
     def __init__(self, *args, **kwargs):
         super().__init__(*args, **kwargs)
 

MDANSE_GUI/Src/MDANSE_GUI/InputWidgets/MDAnalysisTopologyFileWidget.py

@@ -21,7 +21,6 @@
 
 
 class MDAnalysisTopologyFileWidget(InputFileWidget):
-
     def __init__(self, *args, format_options=sorted(mda._PARSERS.keys()), **kwargs):
         self.format_options = ["AUTO"] + list(format_options)
         super().__init__(*args, **kwargs)

MDANSE_GUI/Src/MDANSE_GUI/InputWidgets/MDTrajTopologyFileWidget.py

@@ -17,7 +17,6 @@
 
 
 class MDTrajTopologyFileWidget(InputFileWidget):
-
     def __init__(self, *args, **kwargs):
         super().__init__(*args, **kwargs)
 

MDANSE_GUI/Src/MDANSE_GUI/InputWidgets/MultiInputFileWidget.py

@@ -24,7 +24,6 @@
 
 
 class MultiInputFileWidget(InputFileWidget):
-
     def __init__(self, *args, file_dialog=QFileDialog.getOpenFileNames, **kwargs):
         super().__init__(
             *args,

MDANSE_GUI/Src/MDANSE_GUI/InputWidgets/OptionalFloatWidget.py

@@ -22,7 +22,6 @@
 
 
 class OptionalFloatWidget(WidgetBase):
-
     def __init__(self, *args, **kwargs):
         super().__init__(*args, **kwargs)
         try:

MDANSE_GUI/Src/MDANSE_GUI/InputWidgets/OutputTrajectoryWidget.py

@@ -39,7 +39,6 @@
 
 
 class OutputTrajectoryWidget(WidgetBase):
-
     def __init__(self, *args, **kwargs):
         super().__init__(*args, layout_type="QGridLayout", **kwargs)
         default_value = self._configurator.default

MDANSE_GUI/Src/MDANSE_GUI/InputWidgets/QVectorsWidget.py

@@ -24,7 +24,6 @@
 
 
 class VectorModel(QStandardItemModel):
-
     type_changed = Signal()
     input_is_valid = Signal(bool)
 

MDANSE_GUI/Src/MDANSE_GUI/InputWidgets/RangeWidget.py

@@ -22,7 +22,6 @@
 
 
 class RangeWidget(WidgetBase):
-
     def __init__(self, *args, **kwargs):
         super().__init__(*args, layout_type="QGridLayout", **kwargs)
         self.setup_fields(*args, **kwargs)

MDANSE_GUI/Src/MDANSE_GUI/InputWidgets/UnitCellWidget.py

@@ -22,7 +22,6 @@
 
 
 class UnitCellWidget(WidgetBase):
-
     def __init__(self, *args, **kwargs):
         super().__init__(*args, layout_type="grid", **kwargs)
         self._changing_label = QLabel("Unit cell", parent=self._base)

MDANSE_GUI/Src/MDANSE_GUI/InputWidgets/WidgetBase.py

@@ -29,7 +29,6 @@
 
 
 class WidgetBase(QObject):
-
     valid_changed = Signal()
     value_updated = Signal()
     value_changed = Signal()

MDANSE_GUI/Src/MDANSE_GUI/Session/StructuredSession.py

@@ -29,7 +29,6 @@
 
 
 class UserSettingsModel(QStandardItemModel):
-
     file_loaded = Signal(str)
 
     def __init__(self, *args, settings_filename: str = "", **kwargs):
@@ -187,7 +186,6 @@ def writeout_settings(self):
 
 
 class SettingsGroup:
-
     def __init__(self, group_name: str) -> None:
         self._name = group_name
         self._settings = {}
@@ -261,9 +259,7 @@ def as_dict(self):
 
 
 class SettingsFile:
-
     def __init__(self, name, settings_path: str = None):
-
         if settings_path is None:
             settings_path = PLATFORM.application_directory()
         self._top_name = name

MDANSE_GUI/Src/MDANSE_GUI/Subprocess/JobState.py

@@ -17,7 +17,6 @@
 
 
 class JobState(ABC):
-
     _label = "JobState"
     _allowed_actions = []
 
@@ -54,7 +53,6 @@ def fail(self):
 
 
 class Running(JobState):
-
     _label = "Running"
     _allowed_actions = [
         "Pause",
@@ -92,7 +90,6 @@ def fail(self):
 
 
 class Aborted(JobState):
-
     _label = "Aborted"
     _allowed_actions = ["Delete"]
 
@@ -119,7 +116,6 @@ def fail(self):
 
 
 class Failed(JobState):
-
     _label = "Failed"
     _allowed_actions = ["Delete"]
 
@@ -146,7 +142,6 @@ def fail(self):
 
 
 class Finished(JobState):
-
     _label = "Finished"
     _allowed_actions = ["Delete"]
 
@@ -173,7 +168,6 @@ def fail(self):
 
 
 class Starting(JobState):
-
     _label = "Starting"
     _allowed_actions = [
         "Pause",
@@ -206,7 +200,6 @@ def fail(self):
 
 
 class Paused(JobState):
-
     _label = "Paused"
     _allowed_actions = [
         "Resume",

MDANSE_GUI/Src/MDANSE_GUI/Subprocess/Subprocess.py

@@ -26,7 +26,6 @@
 
 
 class Subprocess(Process):
-
     def __init__(self, *args, **kwargs):
         super().__init__()
         job_name = kwargs.get("job_name")

MDANSE_GUI/Src/MDANSE_GUI/Tabs/InstrumentTab.py

@@ -42,7 +42,6 @@
 
 
 class InstrumentTab(GeneralTab):
-
     def __init__(self, *args, **kwargs):
         super().__init__(*args, **kwargs)
         self._core.add_button("Create Instrument", self._view.add_instrument)

MDANSE_GUI/Src/MDANSE_GUI/Tabs/LoggingTab.py

@@ -36,7 +36,6 @@
 
 
 class GuiLogHandler(Handler):
-
     def __init__(self, *args, **kwargs):
         self._visualiser = None
         super().__init__(*args, **kwargs)

MDANSE_GUI/Src/MDANSE_GUI/Tabs/Models/JobHolder.py

@@ -38,7 +38,6 @@
 
 
 class JobThread(QThread):
-
     def __init__(
         self,
         job_comm: "JobCommunicator",
@@ -90,7 +89,6 @@ def run(self):
 
 
 class JobLogHandler(Handler):
-
     def __init__(self):
         super().__init__()
         self.records = []

MDANSE_GUI/Src/MDANSE_GUI/Tabs/Models/PlotDataModel.py

@@ -64,7 +64,6 @@ def populate(self, file):
 
 
 class DataSetItem(BasicPlotDataItem):
-
     def __init__(self, *args, **kwargs):
         super().__init__(*args, **kwargs)
         self._item_type = "dataset"
@@ -79,7 +78,6 @@ def file_number(self) -> int:
 
 
 class DataFileItem(BasicPlotDataItem):
-
     def __init__(self, *args, **kwargs):
         super().__init__(*args, **kwargs)
         self._item_type = "file"
@@ -92,7 +90,6 @@ def file_number(self) -> int:
 
 
 class MDADataStructure:
-
     def __init__(self, filename: str):
         self._file = h5py.File(filename)
         self.check_metadata()

MDANSE_GUI/Src/MDANSE_GUI/Tabs/Models/PlottingContext.py

@@ -56,7 +56,6 @@ def get_mpl_colours():
 
 
 class SingleDataset:
-
     def __init__(self, name: str, source: "h5py.File"):
         self._name = name
         self._filename = source.filename
@@ -228,7 +227,6 @@ def planes_vs_axis(self, axis_number: int) -> List[np.ndarray]:
 
 
 class SingleCurve:
-
     def __init__(self, data_name: str, file_name: str, *args, **kwargs):
         self._name = data_name
         self._filename = file_name
@@ -289,7 +287,6 @@ def standard_items(self, key: int) -> List["QStandardItem"]:
 
 
 class PlottingContext(QStandardItemModel):
-
     needs_an_update = Signal()
 
     def __init__(self, *args, unit_lookup=None, **kwargs):

MDANSE_GUI/Src/MDANSE_GUI/Tabs/PlotModifiers/AxesWrapper.py

@@ -24,7 +24,6 @@
 
 
 class AxesWrapper:
-
     def __init__(self, *args, **kwargs):
         self._axes = kwargs.pop("axes", None)
         self._plot_elements = []

MDANSE_GUI/Src/MDANSE_GUI/Tabs/PlotModifiers/NormGenerator.py

@@ -18,6 +18,5 @@
 
 
 class NullNorms:
-
     def __call__(self, *args, **kwds) -> float:
         return 1.0

MDANSE_GUI/Src/MDANSE_GUI/Tabs/PlotModifiers/WeightGenerator.py

@@ -18,6 +18,5 @@
 
 
 class NullWeights:
-
     def __call__(self, *args, **kwds) -> float:
         return 1.0

MDANSE_GUI/Src/MDANSE_GUI/Tabs/PlotSelectionTab.py

@@ -37,7 +37,6 @@
 
 
 class PlotSelectionTab(GeneralTab):
-
     def __init__(self, *args, **kwargs):
         super().__init__(*args, **kwargs)
         self._core.add_button("Load .MDA results", self.load_files)

MDANSE_GUI/Src/MDANSE_GUI/Tabs/PlotTab.py

@@ -36,7 +36,6 @@
 
 
 class PlotTab(GeneralTab):
-
     def __init__(self, *args, **kwargs):
         super().__init__(*args, **kwargs)
         self._visualiser._unit_lookup = self

MDANSE_GUI/Src/MDANSE_GUI/Tabs/Plotters/Grid.py

@@ -27,7 +27,6 @@
 
 
 class Grid(Plotter):
-
     def __init__(self) -> None:
         super().__init__()
         self._figure = None

MDANSE_GUI/Src/MDANSE_GUI/Tabs/Plotters/Heatmap.py

@@ -31,7 +31,6 @@
 
 
 class Heatmap(Plotter):
-
     def __init__(self) -> None:
         super().__init__()
         self._figure = None

MDANSE_GUI/Src/MDANSE_GUI/Tabs/Plotters/Plotter.py

@@ -27,7 +27,6 @@
 
 
 class Plotter(metaclass=SubclassFactory):
-
     def __init__(self) -> None:
         self._figure = None
         self._axes = []

MDANSE_GUI/Src/MDANSE_GUI/Tabs/Plotters/PlotterTemplate.py

@@ -31,7 +31,6 @@
 
 
 class PlotterTemplate(metaclass=SubclassFactory):
-
     def __init__(self) -> None:
         self._figure = None
         self._axes = {}