Open
Conversation
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
@mdjurfeldt This PR is not really meant to merge as it is now bug to share the code in order for collaborative debugging;
A fixed PyNN 0.8.1 fork with MUSIC simulator support can be found here:
https://github.com/HBPNeurorobotics/PyNN.git
(music_port_0.8.1 branch)
If there are any issues regarding PyNN and MUSIC compatibility please let me know.
For debugging Ive choosen the example 'music_simple.py' from the PyNN subfolder /examples but of course you are free to use any other as well. However, this music_simple.py is modified such that two NEST simulators are launched instead of a NEST/NEURON pair
In the current version both NEST instances do start independently and it looks like the MUSIC_CONFIG is passed and parsed but I get some segmentation faults;
In general I use the following to debug in MPI environments:
mpiexec -np 2 xterm -e "gdb gdb.in python"in the file gdb.in:
set breakpoint pending on
break MUSIC::Setup::init
run music_simple.py
if you have more advanced debugging techniques please let me know, thank you!