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  • Q3 2019 Milestone 3

    Due by September 23, 2019
    •1/1 issues closed
    100% complete0 open1 closed

  • Q3 2019 Milestone 2

    Due by August 26, 2019
    •6/6 issues closed
    100% complete0 open6 closed

  • Q3 2019 Milestone 1

    Due by July 29, 2019
    0% complete0 open0 closed

  • Q2 2019 Sprint 3

    Due by June 24, 2019
    •3/3 issues closed
    100% complete0 open3 closed

  • Q2 2019 Sprint 2

    Due by May 27, 2019
    •3/3 issues closed
    100% complete0 open3 closed

  • Sprint 39

    - Follow up on any F2F decisions that need to be covered immediately - Finish adding features and continue benchmarking Optimus - Figure out MVP first step for having a test for Optimus in the DCP integration test

    Due by February 22, 2019
    •20/20 issues closed
    100% complete0 open20 closed

  • Sprint 38

    Due by February 5, 2019
    •7/7 issues closed
    100% complete0 open7 closed

  • Sprint 37

    Priorities: 1) Updating our auth to continue talking to ingest 2) Diagram to show AWG for Optimus 3) Adding EmptyDrops to Optimus 4) Finishing Optimus zarr outputs ticket

    Due by January 22, 2019
    •11/11 issues closed
    100% complete0 open11 closed

  • Sprint 36

    Priorities: 1) Equivalence Proofing Optimus

    Due by January 8, 2019
    •15/15 issues closed
    100% complete0 open15 closed

  • Sprint 35

    Due by November 27, 2018
    •7/7 issues closed
    100% complete0 open7 closed

  • Sprint 34

    This sprint is barely 5 days. Priorities: Processing cBeta data Optimus Benchmarking

    Due by November 13, 2018
    •2/2 issues closed
    100% complete0 open2 closed

  • Sprint 33

    Priorities for this sprint: (1) Analyze all cBeta data in prod (or as much as we as the DCP agree we can, or steps towards this as best we can) (2) Work towards finishing Optimus (zarr, benchmarking) (3) Finish Cromwell Tools refactor

    Due by October 30, 2018
    •8/8 issues closed
    100% complete0 open8 closed

  • Sprint 32

    Priorities: 10x with zarr in prod SS2 v2 (with zarr outputs) cBeta devops Scale testing

    Due by October 16, 2018
    •22/22 issues closed
    100% complete0 open22 closed

  • Sprint 31

    Priorities for this sprint: (1) 10X cellranger running in Green box (2) Merge grouped QC SS2 (3) Updating pipeline outputs to Zarr format (4) Starting snRNA-seq outreach and research (5) Cromwell tools refactor

    Due by October 2, 2018
    •8/8 issues closed
    100% complete0 open8 closed

  • Sprint 30

    TBD

    Due by September 18, 2018
    •15/15 issues closed
    100% complete0 open15 closed

  • Sprint 9 - September 14

    Due by September 14, 2018
    0% complete0 open0 closed

  • Sprint 29

    This sprint we will be focusing on completing work from Sprint 28, including releasing Prod and updating to the latest bundle structure and metadata schema. Next priorities are as follows: Continuing work to get the 10x pipeline working in Lira Continuing work on Optimus Beginning scoping snRNA-seq

    Due by September 4, 2018
    •11/11 issues closed
    100% complete0 open11 closed

  • Sprint 28

    The priorities for Sprint 28 are as follows 1) All envs are on CaaS Prod including a Prod deployment 2) Merging in first pass of grouped QC metrics output 3) Falcon is deployed in new dev and integration 4) Optimus swarm!

    Due by August 21, 2018
    •3/3 issues closed
    100% complete0 open3 closed

  • Sprint 27

    Priorities for this sprint are as follows: 1. Prod 2. Falcon 3. Responding to new metadata/bundle structure changes 4. Grouped QC metrics for analysis pipelines 5. Make a plan out of action items for Optimus from meeting with Picard folks

    Due by August 7, 2018
    •14/14 issues closed
    100% complete0 open14 closed