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[WIP] Dl4mic #270

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ctr26 wants to merge 68 commits intomasterHenriquesLab/ZeroCostDL4Mic:masterfrom dl4micHenriquesLab/ZeroCostDL4Mic:dl4micCopy head branch name to clipboard

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Commits

Commits on Feb 17, 2021

• Initial commit

  Romain-Laine

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• Notebook upload

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• Update requirements.txt

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• Update requirements.txt

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• Update requirements.txt

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• Update requirements.txt

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• Update requirements.txt

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• Update requirements.txt

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• Update requirements.txt

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• Update requirements.txt

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• Update requirements.txt

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• Update requirements.txt

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• Update requirements.txt

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• Update requirements.txt

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• Update requirements.txt

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• Update requirements.txt

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• Update requirements.txt

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• Update requirements.txt

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• Adding training dataset

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• requirements.txt update

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Commits on Feb 18, 2021

• Create Dockerfile

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Commits on Feb 21, 2021

• Update Dockerfile

  ctr26

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Commits on Feb 24, 2021

• dockerfile (tf latest)

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• minimal jupyter with cuda merged

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• cuda 10.2

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• Chown is being funny

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• buster?

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• check pip installs were correct though

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• remove tf 1.15

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• Merge pull request #1 from ctr26/tf

  Show description for e4cc934
  ctr26

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• Update Dockerfile

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• try 1.15 again?

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• N2V example

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• Update Dockerfile

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• update minimal

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• Merge branch 'tf-1.15' of https://github.com/ctr26/ZCDL4_binder into tf-1.15

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• Merge branch 'main' into tf-1.15

  ctr26

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• Merge pull request #2 from ctr26/tf-1.15

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Commits on May 12, 2021

• Code is all in place, now to plumb

  ctr26

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Commits on May 13, 2021

• Added pre-report

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• Added setup complete

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• pytest warnings supressed

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Commits on May 14, 2021

• Attempt at quality checks

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• Added predict and quality (ish)

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• Missing import

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• assess conditions

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• default_params_test

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Commits on May 17, 2021

• Added a run function to model(s)

  ctr26

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• Moved models to a submodule

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• Attempt at making models a submod

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• Update project

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Commits on May 18, 2021

• Adding CARE

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• Attempted to remove config dict dependence

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Commits on May 20, 2021

• Model structure

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• bugs in reporting

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• bugs in assess

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• bugs in quality

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• Passing CARE tests, more tests needed

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Commits on May 21, 2021

• n2v passing

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• Sorting out defaults for N2V

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Commits on Jun 9, 2021

• House keeping

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Commits on Jun 11, 2021

• Bug fixes

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  8b6ad76

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• Removing large files

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• fixing import of h5py

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Commits on Aug 9, 2021

• torch test

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• move dockerfile

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• torch working locally

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Commits on Jun 2, 2023

• merge

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