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@Hekstra-Lab

Hekstra Lab

GitHub of the Hekstra Lab. Note: Careless and Reciprocal Spaceship have migrated to https://github.com/rs-station

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  1. phase-retrieval phase-retrieval Public

    A small library implementing phase retrieval algorithms for 2D images.

    Jupyter Notebook 26 11

  2. colav colav Public

    Calculate protein structural representations (dihedral angles, CA pairwise distances, and strain analysis) for downstream analysis (e.g., PCA, t-SNE, or UMAP).

    Jupyter Notebook 8 1

  3. SFcalculator SFcalculator Public

    7 1

  4. mdtools mdtools Public

    Tools for running MD simulations in OpenMM

    Python 6 2

  5. scientific-python-bootcamp scientific-python-bootcamp Public

    Notebooks from a three day introduction to scientific computing in python at Harvard University.

    Jupyter Notebook 3 2

  6. microutil microutil Public

    Python utils for working microscopy datasets

    Python 2 2

Repositories

Showing 10 of 44 repositories
  • integrator Public

    Proof of concept profile fitting and integration with neural nets

    Hekstra-Lab/integrator’s past year of commit activity
    Python 2 0 0 0 Updated Jan 21, 2025
  • Hekstra-Lab/SFcalculator_tf’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jan 20, 2025
  • Hekstra-Lab/SFcalculator_jax’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jan 20, 2025
  • SFcalculator_torch Public

    Differentiable pipeline connecting protein atomic models and crystallography structure factors

    Hekstra-Lab/SFcalculator_torch’s past year of commit activity
    Python 2 MIT 2 1 0 Updated Jan 20, 2025
  • SFcalculator Public
    Hekstra-Lab/SFcalculator’s past year of commit activity
    7 1 1 0 Updated Jan 20, 2025
  • raman-analysis Public

    Spontaneous Raman analysis library

    Hekstra-Lab/raman-analysis’s past year of commit activity
    Python 1 1 1 4 Updated Jan 7, 2025
  • yeast-mrcnn Public

    Another implementation of mask-rcnn for detecting budding yeast cells in microscopy images

    Hekstra-Lab/yeast-mrcnn’s past year of commit activity
    Python 0 MIT 0 3 1 Updated Jan 7, 2025
  • microutil Public

    Python utils for working microscopy datasets

    Hekstra-Lab/microutil’s past year of commit activity
    Python 2 BSD-3-Clause 2 7 1 Updated Jan 7, 2025
  • Hekstra-Lab/napari-labeller’s past year of commit activity
    Python 2 BSD-3-Clause 0 1 1 Updated Jan 7, 2025
  • fast-overlap Public

    meep meep

    Hekstra-Lab/fast-overlap’s past year of commit activity
    Python 0 2 2 1 Updated Jan 7, 2025