Multiplexing - Ion Shuttling Analysis

This repository contains analysis of 9-ion shuttling Rabi oscillation data (dated January 16, 2025).

Setup Instructions

Prerequisites

• Anaconda or Miniconda

Environment Setup

1. Clone this repository:

   git clone <repository-url>
   cd Multiplexing

2. Set up the conda environment using the provided script:

   chmod +x setup_multiplexing_env.sh
   ./setup_multiplexing_env.sh

   This script will:

   • Create a conda environment named "multiplexing" with Python 3.9
   • Install all required dependencies
   • Set up a Jupyter kernel for the environment

3. Alternatively, you can manually create the environment:

   conda create -y -n multiplexing python=3.9
   conda activate multiplexing
   conda install -y -c conda-forge --file requirements.txt
   conda install -y -c conda-forge jupyter notebook
   python -m ipykernel install --user --name multiplexing --display-name "Python (multiplexing)"

Usage

1. Activate the conda environment:

   conda activate multiplexing

2. Launch Jupyter Notebook:

   jupyter notebook

3. Open the "Shuttling 9-ion rabi 20250116.ipynb" notebook

4. Select the "Python (multiplexing)" kernel from the kernel menu

Dependencies

The analysis requires the following Python packages (specified in requirements.txt):

• numpy 1.20.3
• scipy 1.7.3
• matplotlib 3.5.3
• qutip 4.7.0
• h5py 3.6.0
• pynverse 0.1.4
• pandas 1.3.5

License

[Specify your license here]