debugging env #11

	name: act-workflow

	on:
	push:
	branches:
	- main
	- dev
	schedule:
	- cron: "0 0 * * *"
	workflow_dispatch:

	permissions:
	contents: write
	packages: write
	issues: write
	id-token: write
	pages: write

	jobs:
	run-everything:
	name: run everything all at once
	runs-on: ubuntu-latest
	steps:

	- name: Checkout code
	uses: actions/checkout@v4
	with:
	fetch-depth: 0
	ref: dev

	- name: debug env
	run: \|
	echo "current wkdir:"
	pwd
	echo "files in wkdir:"
	ls -al

	- name: Set up Python
	uses: actions/setup-python@v4
	with:
	python-version: "3.10"

	- name: Install Python requirements
	run: pip install -r requirements.txt

	- name: debug env
	run: \|
	echo "current wkdir:"
	pwd
	echo "files in dir"
	ls -a

	- name: Set up R
	uses: r-lib/actions/setup-r@v2

	- name: Install R requirements
	run: Rscript R_requirements.R

	- name: Run orchestrator script
	run: \|
	current_date=$(date +"%Y-%m-%d")
	python3 ./code/orchestrate.py -i '/Volumes/VossLab/Repositories/Accelerometer_Data/' -token 'DE4E2DB72778DACA9B8848574107D2F5P' \| tee ./out/log-${current_date}.txt

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