Anaconda-1 #710

	# This workflow is setup by Fei Zhang to use Github Actions 2020-09-14

	name: hiperseis_main_ci

	on: [push]

	jobs:
	build:

	runs-on: ubuntu-latest

	steps:
	- uses: actions/checkout@main
	- name: Restore dependencies
	id: cache-dependencies
	uses: actions/cache/restore@main
	with:
	path: \|
	/home/runner
	/usr/share/miniconda/envs/hiperseis
	key: anaconda-1
	- name: Setting up environment
	if: steps.cache-dependencies.outputs.cache-hit != 'true'
	run: \|
	wget -q https://repo.anaconda.com/archive/Anaconda3-2021.11-Linux-x86_64.sh -O anaconda.sh
	bash anaconda.sh -b -p $HOME/anaconda3 > /dev/null 2>&1
	export PATH="$HOME/anaconda3/bin:$PATH"
	conda init bash
	source ~/.bashrc
	sudo apt-get install openmpi-bin libopenmpi-dev
	sudo apt-get install libhdf5-dev
	- name: Install dependencies
	if: steps.cache-dependencies.outputs.cache-hit != 'true'
	run: \|
	git submodule update --init --recursive
	source setup_scripts/conda_env_linux.sh hiperseis
	- name: Always save cache
	id: cache-dependencies-save
	if: always()
	uses: actions/cache/save@main
	with:
	key: ${{ steps.cache-dependencies.outputs.cache-primary-key }}
	path: \|
	/home/runner/work/hiperseis
	/usr/share/miniconda/envs/hiperseis
	- name: Running pytest
	shell: bash -el {0}
	run: \|
	eval "$(conda shell.bash hook)"
	conda init
	conda activate hiperseis
	sudo apt-get install openmpi-bin libopenmpi-dev
	sudo apt-get install libhdf5-dev
	pip install -r tests/requirements.txt
	coverage run -m pytest ./tests
	coverage xml
	- name: Coveralls GitHub Action
	uses: coverallsapp/github-action@main
	with:
	format: cobertura

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