Merge pull request #1185 from GeoscienceAustralia/develop

Merge 'develop' into 'stable'

.github/PULL_REQUEST_TEMPLATE.md

@@ -3,9 +3,10 @@ Include a brief description of the changes being proposed, and why they are nece
 
 ### Closes issues (optional)
 - Closes Issue #000
-- Closes Issue #000
 
-### Checklist (replace `[ ]` with `[x]` to check off)
+### Checklist 
+(Replace `[ ]` with `[x]` to check off)
+
 - [ ] Notebook created using the [DEA-notebooks template](https://github.com/GeoscienceAustralia/dea-notebooks/tree/develop)
 - [ ] Remove any unused Python packages from `Load packages`
 - [ ] Remove any unused/empty code cells
@@ -15,5 +16,6 @@ Include a brief description of the changes being proposed, and why they are nece
 - [ ] Clear all outputs, run notebook from start to finish, and save the notebook in the state where all cells have been sequentially evaluated
 - [ ] Test notebook on both the `NCI` and `DEA Sandbox` (flag if not working as part of PR and ask for help to solve if needed)
 - [ ] If applicable, update the `Notebook currently compatible with the NCI|DEA Sandbox environment only` line below the notebook title to reflect the environments the notebook is compatible with
+- [ ] Check for any spelling mistakes using the DEA Sandbox's built-in spellchecker (double click on markdown cells then right-click on pink highlighted words). For example:
 
-
+![sandbox_spellchecker](https://github.com/GeoscienceAustralia/dea-notebooks/assets/17680388/c5e5848b-fd54-4eb5-aae9-29838761f2af)

.github/workflows/test_notebooks.yml

@@ -36,7 +36,9 @@ jobs:
         aws-region: ap-southeast-2
 
     - name: Copy tide modelling files with the AWS CLI
-      run: aws s3 sync s3://dea-non-public-data/tide_models/tide_models tide_models
+      run: |
+        aws s3 sync s3://dea-non-public-data/tide_models/tide_models/fes2014 tide_models/fes2014
+        aws s3 sync s3://dea-non-public-data/tide_models/tide_models/hamtide tide_models/hamtide
 
     - name: Login to Amazon ECR Private
       id: login-ecr

Beginners_guide/README.rst

@@ -5,7 +5,6 @@ The Beginners Guide contains introductory notebooks aimed at introducing Jupyter
 
 .. toctree::
    :maxdepth: 1
-   :caption: Beginner's Guide
 
    01_Jupyter_notebooks.ipynb
    02_DEA.ipynb
@@ -25,7 +24,6 @@ Once you have you have completed the beginner tutorials, join advanced users in
 
 .. toctree::
    :maxdepth: 2   
-   :caption: Guided Tutorial
 
    Guided_tutorial.ipynb
 

DEA_products/DEA_Wetlands_Insight_Tool.ipynb

@@ -70,7 +70,7 @@
     "\n",
     "## Related products\n",
     "* [DEA Fractional Cover (Landsat)](../DEA_products/DEA_Fractional_Cover.ipynb)\n",
-    "* [DEA Tasseled Cap Indices Percentiles Calendar Year (Landsat)](https://docs.dea.ga.gov.au/data/product/dea-wetness-percentiles-landsat)\n",
+    "* [DEA Tasseled Cap Indices Percentiles Calendar Year (Landsat)](https://docs.dea.ga.gov.au/data/product/dea-tasseled-cap-percentiles-landsat/)\n",
     "* [DEA Water Observations (Landsat)](../DEA_products/DEA_Water_Observations.ipynb)"
    ]
   },

DEA_products/README.rst

@@ -5,7 +5,6 @@ Notebooks introducing DEA's satellite datasets and derived products, including h
 
 .. toctree::
    :maxdepth: 1
-   :caption: DEA products
 
    DEA_Landsat_Surface_Reflectance.ipynb
    DEA_Sentinel2_Surface_Reflectance.ipynb

How_to_guides/README.rst

@@ -5,7 +5,6 @@ A recipe book of simple code examples demonstrating how to perform common geospa
 
 .. toctree::
    :maxdepth: 1
-   :caption: How to guides
 
    Analyse_multiple_polygons.ipynb
    Animated_timeseries.ipynb

How_to_guides/Reprojecting_data.ipynb

@@ -169,6 +169,7 @@
     "Now we have loaded our raster dataset, we can inspect its `GeoBox` object that we will use to allow us to reproject data.\n",
     "The `GeoBox` can be accessed using the `.geobox` method.\n",
     "It includes a set of information that together completely define the spatial grid of our data:\n",
+    "\n",
     "* The width (e.g. `95`) and height (e.g. `90`) of our data in pixels\n",
     "* An `Affine` object which defines the spatial resolution (e.g. `-0.0020751667555555255` and `0.0020769114631576106`) and spatial position (e.g. `149.036528545` and `-35.198132594`) of our data\n",
     "* The coordinate reference system of our data (e.g. `+init=epsg:4326`)\n"
@@ -779,7 +780,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.8.10"
+   "version": "3.10.13"
   },
   "widgets": {
    "application/vnd.jupyter.widget-state+json": {

Interactive_apps/Generating_satellite_animations.ipynb

@@ -79,7 +79,6 @@
    ]
   },
   {
-   "attachments": {},
    "cell_type": "markdown",
    "metadata": {},
    "source": [
@@ -130,6 +129,7 @@
     "\n",
     "The animation tool supports several advanced features. \n",
     "To access these, click on the `Advanced` tab in the menu to the left of the map to expand it:\n",
+    "\n",
     "* `Frame interval`: The frame rate used to animate the satellite data. \n",
     "Values are in milliseconds - larger values will produce a longer, slower animation.\n",
     "* `Resolution`: The spatial resolution to load data (in metres). By default, the tool will automatically set the best possible resolution depending on the satellites selected (i.e. 30 m for Landsat, 10 m for Sentinel-2). \n",
@@ -251,7 +251,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.8.10"
+   "version": "3.10.13"
   },
   "widgets": {
    "application/vnd.jupyter.widget-state+json": {

Interactive_apps/README.rst

@@ -5,7 +5,6 @@ Interactive widgets and apps that require little or no coding to run
 
 .. toctree::
    :maxdepth: 1
-   :caption: Interactive apps
 
    Change_filmstrips.ipynb
    Coastal_transects.ipynb