Upload code coverage

.github/workflows/dea-intertidal-image.yml

@@ -51,6 +51,13 @@ jobs:
           docker-compose exec -T dea_intertidal /bin/sh -c "sh ./tests/run_tests"
           docker-compose down
 
+      # Update code coverage
+      - name: Upload coverage to Codecov
+        uses: codecov/codecov-action@v3
+        with:
+          directory: ./artifacts/
+          fail_ci_if_error: false
+
   push_ecr:
     needs: [test]
     runs-on: ubuntu-latest

README.md

@@ -4,6 +4,8 @@
 
 [![DOI](https://img.shields.io/badge/DOI-10.1016/j.ecss.2019.03.006-0e7fbf.svg)](https://doi.org/10.1016/j.ecss.2019.03.006)
 [![License](https://img.shields.io/badge/License-Apache%202.0-blue.svg)](https://opensource.org/licenses/Apache-2.0)
+[![codecov](https://codecov.io/gh/GeoscienceAustralia/dea-intertidal/branch/tests/graph/badge.svg?token=7HXSIPGT5I)](https://codecov.io/gh/GeoscienceAustralia/dea-intertidal)
+[![example workflow](https://github.com/GeoscienceAustralia/dea-intertidal/actions/workflows/dea-intertidal-image.yml/badge.svg)](https://github.com/GeoscienceAustralia/intertidal/actions/workflows/dea-intertidal-image.yml)
 
 **License:** The code in this repository is licensed under the [Apache License, Version 2.0](https://www.apache.org/licenses/LICENSE-2.0). Digital Earth Australia data is licensed under the [Creative Commons by Attribution 4.0 license](https://creativecommons.org/licenses/by/4.0/).
 

docker-compose.yml

@@ -31,6 +31,7 @@ services:
       - GDAL_HTTP_MAX_RETRY=10
     volumes:
       - .:/code
+      - ./artifacts:/mnt/artifacts
       - ./tide_models/:/var/share/tide_models
     depends_on:
       - public_odc

setup.py

@@ -67,7 +67,7 @@
     "entry_points": {
         "console_scripts": [
             "dea-intertidal = intertidal.elevation:intertidal_cli",
-            "dea-intertidal-hltc = intertidal.hltc:hltc_cli",
+            "dea-intertidal-composites = intertidal.composites:intertidal_composites_cli",
         ]
     },
 }

tests/run_tests

@@ -1,4 +1,8 @@
 #!/bin/sh
 
 # Run integration tests and generate code coverage
-pytest --cov=coastlines --cov-report=xml tests/integration
+pytest --cov=coastlines --cov-report=xml tests/integration
+
+# Copy code coverage to artifacts directory so they are accessible
+# outside the docker container via the mounted volume
+cp coverage.xml /mnt/artifacts/