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GeoscienceAustralia · Nov 6, 2017 · fc27a72 · fc27a72
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diff --git a/.gitignore b/.gitignore
diff --git a/README.MD b/README.MD
diff --git a/__init__.py b/__init__.py
diff --git a/catalogue/__init__.py b/catalogue/__init__.py
diff --git a/catalogue/data/AUSTCAT.MW.V0.12.csv b/catalogue/data/AUSTCAT.MW.V0.12.csv
diff --git a/catalogue/data/AUSTCAT_V0.11_hmtk.csv b/catalogue/data/AUSTCAT_V0.11_hmtk.csv
diff --git a/catalogue/data/AUSTCAT_V0.11_hmtk_declustered.csv b/catalogue/data/AUSTCAT_V0.11_hmtk_declustered.csv
diff --git a/catalogue/data/AUSTCAT_V0.11_hmtk_declustered_GK74.csv b/catalogue/data/AUSTCAT_V0.11_hmtk_declustered_GK74.csv
diff --git a/catalogue/data/AUSTCAT_V0.11_hmtk_mx_revml.csv b/catalogue/data/AUSTCAT_V0.11_hmtk_mx_revml.csv
diff --git a/catalogue/data/AUSTCAT_V0.11_hmtk_mx_revml_declustered.csv b/catalogue/data/AUSTCAT_V0.11_hmtk_mx_revml_declustered.csv
diff --git a/catalogue/data/AUSTCAT_V0.12_hmtk_deblast.csv b/catalogue/data/AUSTCAT_V0.12_hmtk_deblast.csv
diff --git a/catalogue/data/AUSTCAT_V0.12_hmtk_declustered.csv b/catalogue/data/AUSTCAT_V0.12_hmtk_declustered.csv
diff --git a/catalogue/data/AUSTCAT_V0.12_hmtk_mx_orig.csv b/catalogue/data/AUSTCAT_V0.12_hmtk_mx_orig.csv
diff --git a/catalogue/data/AUSTCAT_V0.12_hmtk_mx_orig_declustered.csv b/catalogue/data/AUSTCAT_V0.12_hmtk_mx_orig_declustered.csv
diff --git a/catalogue/data/__init__.py b/catalogue/data/__init__.py
diff --git a/catalogue/data/stash/AUSTCAT_V0.12_hmtk_declustered.csv b/catalogue/data/stash/AUSTCAT_V0.12_hmtk_declustered.csv
diff --git a/catalogue/data/stash/AUSTCAT_V0.12_hmtk_mx_orig.csv b/catalogue/data/stash/AUSTCAT_V0.12_hmtk_mx_orig.csv
diff --git a/catalogue/data/stash/AUSTCAT_V0.12_hmtk_mx_orig_declustered.csv b/catalogue/data/stash/AUSTCAT_V0.12_hmtk_mx_orig_declustered.csv
diff --git a/catalogue/magnitude/__init__.py b/catalogue/magnitude/__init__.py
diff --git a/catalogue/magnitude/conversions/__init__.py b/catalogue/magnitude/conversions/__init__.py
diff --git a/catalogue/magnitude/ml/__init__.py b/catalogue/magnitude/ml/__init__.py
diff --git a/catalogue/magnitude/ml/get_amp_cwb_notebook.ipynb b/catalogue/magnitude/ml/get_amp_cwb_notebook.ipynb
diff --git a/catalogue/magnitude/ml/local_magnitude.py b/catalogue/magnitude/ml/local_magnitude.py
diff --git a/catalogue/magnitude/ml/local_magnitude.pyc b/catalogue/magnitude/ml/local_magnitude.pyc
diff --git a/catalogue/magnitude/mw/Main/__init__.py b/catalogue/magnitude/mw/Main/__init__.py
diff --git a/catalogue/magnitude/mw/Main/meta_data/catalogue/cat-ref.csv b/catalogue/magnitude/mw/Main/meta_data/catalogue/cat-ref.csv
diff --git a/catalogue/magnitude/mw/Main/meta_data/catalogue/readme.txt b/catalogue/magnitude/mw/Main/meta_data/catalogue/readme.txt
diff --git a/catalogue/magnitude/mw/Main/scripts/__init__.py b/catalogue/magnitude/mw/Main/scripts/__init__.py
diff --git a/catalogue/magnitude/mw/Main/scripts/main.py b/catalogue/magnitude/mw/Main/scripts/main.py
diff --git a/catalogue/magnitude/mw/Main/scripts/modules.py b/catalogue/magnitude/mw/Main/scripts/modules.py
diff --git a/catalogue/magnitude/mw/Main/scripts/read-me.txt b/catalogue/magnitude/mw/Main/scripts/read-me.txt
diff --git a/catalogue/magnitude/mw/__init__.py b/catalogue/magnitude/mw/__init__.py
diff --git a/catalogue/magnitude/mw/download_data_iris.py b/catalogue/magnitude/mw/download_data_iris.py
diff --git a/catalogue/magnitude/mw/plots_input.py b/catalogue/magnitude/mw/plots_input.py
diff --git a/catalogue/magnitude/mw/plots_maps.py b/catalogue/magnitude/mw/plots_maps.py
diff --git a/catalogue/magnitude/mw/plots_output.py b/catalogue/magnitude/mw/plots_output.py
diff --git a/catalogue/magnitude/mw/process_data.py b/catalogue/magnitude/mw/process_data.py
diff --git a/catalogue/magnitude/mw/run_kiwi.py b/catalogue/magnitude/mw/run_kiwi.py
diff --git a/catalogue/magnitude/mw/sandpit.py b/catalogue/magnitude/mw/sandpit.py
diff --git a/catalogue/magnitude/mw/test b/catalogue/magnitude/mw/test
diff --git a/catalogue/magnitude/validation/__init__.py b/catalogue/magnitude/validation/__init__.py
diff --git a/catalogue/parsers.hold/__init__.py b/catalogue/parsers.hold/__init__.py
diff --git a/catalogue/parsers.py b/catalogue/parsers.py
diff --git a/catalogue/remove_duplicate_events.py b/catalogue/remove_duplicate_events.py
@@ -3,13 +3,14 @@
 
 '''
 from parsers import parse_NSHA2012_catalogue
-from misc_tools import dict2array, checkfloat
+#from misc_tools import dict2array, checkfloat
 from numpy import array, isnan, where, hstack, delete
 from os import path
 
 # Parse 2012 NSHA catalogue as dict
 nsha2012csv = path.join('data', 'AUSTCAT.MW.V0.12.csv')
 nsha2012csv = path.join('data', 'AUSTCAT.MP.V0.12.csv') # for use with preferred magnitudes
+nsha2012csv = path.join('data', 'AUSTCAT.MW.V0.11.csv') # for use with 2012 catalogue
 
 # Parse 2012 NSHA catalogue as dict
 nsha_dict = parse_NSHA2012_catalogue(nsha2012csv)

diff --git a/data/dataless/AU.seed b/data/dataless/AU.seed
diff --git a/ground_motion/mmi/auscat_mmi_merge.csv b/ground_motion/mmi/auscat_mmi_merge.csv
diff --git a/ground_motion/mmi/mmi_mags.csv b/ground_motion/mmi/mmi_mags.csv
diff --git a/jobs/README.md b/jobs/README.md
diff --git a/jobs/__init__.py b/jobs/__init__.py
diff --git a/jobs/provenance/__init__.py b/jobs/provenance/__init__.py
diff --git a/mfd/YC_moment_balance.py b/mfd/YC_moment_balance.py
diff --git a/mfd/__init__.py b/mfd/__init__.py
diff --git a/mfd/fault_slip_rate_GR_conversion.py b/mfd/fault_slip_rate_GR_conversion.py
diff --git a/mfd/moment_rate_balancing.py b/mfd/moment_rate_balancing.py
diff --git a/mfd/test_fault_slip_rate_GR_conversion.py b/mfd/test_fault_slip_rate_GR_conversion.py
diff --git a/postprocessing/__init__.py b/postprocessing/__init__.py
diff --git a/postprocessing/ccby1.png b/postprocessing/ccby1.png
diff --git a/postprocessing/ccby_narrow.png b/postprocessing/ccby_narrow.png
diff --git a/postprocessing/deaggregation/__init__.py b/postprocessing/deaggregation/__init__.py
diff --git a/postprocessing/hazard_curves/__init__.py b/postprocessing/hazard_curves/__init__.py
diff --git a/postprocessing/hazard_curves/cmp_multi_oq_haz_curves.py b/postprocessing/hazard_curves/cmp_multi_oq_haz_curves.py
diff --git a/postprocessing/hazard_curves/examples/ratios/multimod_collapsed_hazard_ratio_PGA.csv b/postprocessing/hazard_curves/examples/ratios/multimod_collapsed_hazard_ratio_PGA.csv
diff --git a/postprocessing/hazard_curves/plot_hazard_curve.py b/postprocessing/hazard_curves/plot_hazard_curve.py
diff --git a/postprocessing/maps/__init__.py b/postprocessing/maps/__init__.py
diff --git a/postprocessing/maps/cw1-013.cpt b/postprocessing/maps/cw1-013.cpt
diff --git a/postprocessing/maps/map_nsha18.py b/postprocessing/maps/map_nsha18.py
@@ -83,7 +83,7 @@
     idx = 2
     for key in keys:
         if gshap == True:
-            tmpdict[key] = float(dat[idx]) / g
+            tmpdict[key] = float(dat[idx]) #/ g
         else:
             tmpdict[key] = float(dat[idx])
         idx += 1
@@ -271,7 +271,11 @@
         cmap, zvals = cpt2colormap(cptfile, ncolours, rev=True)
     except:
         try:
-            nascptfile = '/nas/gemd/ehp/georisk_earthquake/modelling/sandpits/tallen/NSHA2018/postprocessing/maps/'+ cptfile
+            if gshap == True:
+                nascptfile = '/nas/gemd/ehp/georisk_earthquake/hazard/DATA/cpt/gshap.cpt'
+            else:
+                nascptfile = '/nas/gemd/ehp/georisk_earthquake/modelling/sandpits/tallen/NSHA2018/postprocessing/maps/'+ cptfile
+
             #cptfile = '/nas/gemd/ehp/georisk_earthquake/modelling/sandpits/tallen/NSHA2018/postprocessing/maps/GMT_no_green.cpt'
             cmap, zvals = cpt2colormap(nascptfile, ncolours, rev=True)
         except:
@@ -328,6 +332,19 @@
     # get map bbox
     map_bbox = ax.get_position().extents
 
+     ##########################################################################################
+    # add DRAFT text!
+    ##########################################################################################
+    import matplotlib.patheffects as path_effects
+    #import matplotlib.patheffects as PathEffects
+    drafttext = figure.text(0.5, 0.5, 'DRAFT', color='w', rotation=45,
+                          ha='center', va='center', size=160, alpha=0.1)
+    #drafttext = ax.annotate("DRAFT", xy=(.5, .5), xytext=(.5, .5),
+    #                        ha='center', va='center', size=160, rotation=45)                         
+    drafttext.set_path_effects([path_effects.Stroke(linewidth=4, foreground='maroon'),
+                       path_effects.Normal()])
+    drafttext.set_alpha(0.5)
+
     ##########################################################################################
     # add GA logo
     ##########################################################################################
@@ -373,7 +390,9 @@
         newax = figure.add_axes(logo_bbox) #, zorder=-1)
         newax.imshow(im)
         newax.axis('off')
-
+
+
+
     ##########################################################################################
     # superimpose area source shapefile
     ##########################################################################################
@@ -476,10 +495,10 @@
                 dpi=300, format='png', bbox_inches='tight')
 
     # save pdf file
-    '''
+
     plt.savefig(path.join('maps', 'hazard_map_'+modelName.replace(' ','_')+'.'+key+'.pdf'), \
                 dpi=300, format='pdf', bbox_inches='tight')
-    '''
+
     plt.show()
 
     ##########################################################################################

diff --git a/shared/NSHA18_Aus_GMPE_75thp_logic_tree_cal_power_p0.4.xml b/shared/NSHA18_Aus_GMPE_75thp_logic_tree_cal_power_p0.4.xml
diff --git a/shared/nsha_cities.csv b/shared/nsha_cities.csv
diff --git a/shared/nsha_localities.csv b/shared/nsha_localities.csv
diff --git a/shared/seismic_source_model_weights_rounded_p0.4.csv b/shared/seismic_source_model_weights_rounded_p0.4.csv
diff --git a/shared/seismic_source_model_weights_rounded_p0.4.edit.csv b/shared/seismic_source_model_weights_rounded_p0.4.edit.csv
diff --git a/shared/seismic_source_model_weights_rounded_p0.4.ss_split.csv b/shared/seismic_source_model_weights_rounded_p0.4.ss_split.csv
diff --git a/source_models/__init__.py b/source_models/__init__.py
diff --git a/source_models/complete_model/ARUP_Background_collapsed.xml b/source_models/complete_model/ARUP_Background_collapsed.xml
diff --git a/source_models/complete_model/ARUP_collapsed.xml b/source_models/complete_model/ARUP_collapsed.xml
diff --git a/source_models/complete_model/AUS6_collapsed.xml b/source_models/complete_model/AUS6_collapsed.xml
diff --git a/source_models/complete_model/DIMAUS_collapsed.xml b/source_models/complete_model/DIMAUS_collapsed.xml
diff --git a/source_models/complete_model/Domains_collapsed.xml b/source_models/complete_model/Domains_collapsed.xml
diff --git a/source_models/complete_model/Leonard08_collapsed.xml b/source_models/complete_model/Leonard08_collapsed.xml
diff --git a/source_models/complete_model/NSHA13_BACKGROUND_collapsed.xml b/source_models/complete_model/NSHA13_BACKGROUND_collapsed.xml
diff --git a/source_models/complete_model/NSHA13_collapsed.xml b/source_models/complete_model/NSHA13_collapsed.xml
diff --git a/source_models/complete_model/SinMcC2016_collapsed.xml b/source_models/complete_model/SinMcC2016_collapsed.xml
diff --git a/source_models/complete_model/mx/ARUP_Background_collapsed.xml b/source_models/complete_model/mx/ARUP_Background_collapsed.xml
diff --git a/source_models/complete_model/mx/ARUP_collapsed.xml b/source_models/complete_model/mx/ARUP_collapsed.xml
diff --git a/source_models/complete_model/mx/AUS6_collapsed.xml b/source_models/complete_model/mx/AUS6_collapsed.xml
diff --git a/source_models/complete_model/mx/DIMAUS_collapsed.xml b/source_models/complete_model/mx/DIMAUS_collapsed.xml
diff --git a/source_models/complete_model/mx/Domains_collapsed.xml b/source_models/complete_model/mx/Domains_collapsed.xml
diff --git a/source_models/complete_model/mx/Leonard08_collapsed.xml b/source_models/complete_model/mx/Leonard08_collapsed.xml
diff --git a/source_models/complete_model/mx/NFSM_AUS6_collapsed_additive_w1.xml b/source_models/complete_model/mx/NFSM_AUS6_collapsed_additive_w1.xml
diff --git a/source_models/complete_model/mx/NFSM_DIMAUS_collapsed_additive_w1.xml b/source_models/complete_model/mx/NFSM_DIMAUS_collapsed_additive_w1.xml
diff --git a/source_models/complete_model/mx/NFSM_NSHA13_collapsed_additve_w1.xml b/source_models/complete_model/mx/NFSM_NSHA13_collapsed_additve_w1.xml
diff --git a/source_models/complete_model/mx/NSHA13_BACKGROUND_collapsed.xml b/source_models/complete_model/mx/NSHA13_BACKGROUND_collapsed.xml
diff --git a/source_models/complete_model/mx/NSHA13_collapsed.xml b/source_models/complete_model/mx/NSHA13_collapsed.xml
diff --git a/source_models/complete_model/mx/SinMcC2016_collapsed.xml b/source_models/complete_model/mx/SinMcC2016_collapsed.xml
diff --git a/source_models/complete_model/nsha18_source_model_logic_tree.xml b/source_models/complete_model/nsha18_source_model_logic_tree.xml
diff --git a/source_models/data/__init__.py b/source_models/data/__init__.py
diff --git a/source_models/data/shapefiles/__init__.py b/source_models/data/shapefiles/__init__.py
diff --git a/source_models/faults/NFSM_AUS6_collapsed_additive_w1/NFSM_AUS6_collapsed_additive_w1.xml b/source_models/faults/NFSM_AUS6_collapsed_additive_w1/NFSM_AUS6_collapsed_additive_w1.xml
diff --git a/source_models/faults/NFSM_AUS6_collapsed_additive_w1/NFSM_source_model_logic_tree.xml b/source_models/faults/NFSM_AUS6_collapsed_additive_w1/NFSM_source_model_logic_tree.xml
diff --git a/...sed_additive_w1/National_Fault_Source_Model_2018_Collapsed_AUS6_all_methods_collapsed.xml b/...sed_additive_w1/National_Fault_Source_Model_2018_Collapsed_AUS6_all_methods_collapsed.xml
diff --git a/source_models/faults/NFSM_DIMAUS_collapsed_additive_w1/NFSM_DIMAUS_collapsed_additive_w1.xml b/source_models/faults/NFSM_DIMAUS_collapsed_additive_w1/NFSM_DIMAUS_collapsed_additive_w1.xml
diff --git a/source_models/faults/NFSM_DIMAUS_collapsed_additive_w1/NFSM_source_model_logic_tree.xml b/source_models/faults/NFSM_DIMAUS_collapsed_additive_w1/NFSM_source_model_logic_tree.xml
diff --git a/...ollapsed_additive_w1/National_Fault_Source_Model_2018_Collapsed_all_methods_collapsed.xml b/...ollapsed_additive_w1/National_Fault_Source_Model_2018_Collapsed_all_methods_collapsed.xml
diff --git a/source_models/faults/NFSM_NSHA13_collapsed_additive_w1/NFSM_NSHA13_collapsed_additve_w1.xml b/source_models/faults/NFSM_NSHA13_collapsed_additive_w1/NFSM_NSHA13_collapsed_additve_w1.xml
diff --git a/source_models/faults/NFSM_NSHA13_collapsed_additive_w1/NFSM_source_model_logic_tree.xml b/source_models/faults/NFSM_NSHA13_collapsed_additive_w1/NFSM_source_model_logic_tree.xml
diff --git a/...3/National_Fault_Source_Model_2018_Collapsed_NSHA13_all_methods_collapsed_inc_cluster.xml b/...3/National_Fault_Source_Model_2018_Collapsed_NSHA13_all_methods_collapsed_inc_cluster.xml
diff --git a/.../National_Fault_Source_Model_2018_GR/National_Fault_Source_Model_2018_GR_source_model.xml b/.../National_Fault_Source_Model_2018_GR/National_Fault_Source_Model_2018_GR_source_model.xml
diff --git a/...ault_Source_Model_2018_GR/National_Fault_Source_Model_2018_GR_source_model_logic_tree.xml b/...ault_Source_Model_2018_GR/National_Fault_Source_Model_2018_GR_source_model_logic_tree.xml
diff --git a/source_models/faults/__init__.py b/source_models/faults/__init__.py
diff --git a/source_models/faults/build_national_fsm.py b/source_models/faults/build_national_fsm.py
diff --git a/source_models/faults/build_national_fsm_collapsed_rates.py b/source_models/faults/build_national_fsm_collapsed_rates.py
diff --git a/source_models/faults/combine_geom_filtered_pts.py b/source_models/faults/combine_geom_filtered_pts.py
diff --git a/source_models/faults/geom_filter_parallel.py b/source_models/faults/geom_filter_parallel.py
diff --git a/source_models/faults/redo_ids.py b/source_models/faults/redo_ids.py
diff --git a/source_models/faults/run_build_fsm.sh b/source_models/faults/run_build_fsm.sh
diff --git a/source_models/faults/run_geom_parallel.sh b/source_models/faults/run_geom_parallel.sh
diff --git a/source_models/faults/shapefile2nrml/SUMATRA/sumatra.dbf b/source_models/faults/shapefile2nrml/SUMATRA/sumatra.dbf
diff --git a/source_models/faults/shapefile2nrml/SUMATRA/sumatra.prj b/source_models/faults/shapefile2nrml/SUMATRA/sumatra.prj
diff --git a/source_models/faults/shapefile2nrml/SUMATRA/sumatra.qpj b/source_models/faults/shapefile2nrml/SUMATRA/sumatra.qpj
diff --git a/source_models/faults/shapefile2nrml/SUMATRA/sumatra.shp b/source_models/faults/shapefile2nrml/SUMATRA/sumatra.shp
diff --git a/source_models/faults/shapefile2nrml/SUMATRA/sumatra.shx b/source_models/faults/shapefile2nrml/SUMATRA/sumatra.shx
diff --git a/source_models/faults/shapefile2nrml/__init__.py b/source_models/faults/shapefile2nrml/__init__.py
diff --git a/source_models/faults/shapefile2nrml/example_calls.sh b/source_models/faults/shapefile2nrml/example_calls.sh
diff --git a/source_models/faults/shapefile2nrml/shapefile_2_complexfault.py b/source_models/faults/shapefile2nrml/shapefile_2_complexfault.py
diff --git a/source_models/faults/shapefile2nrml/shapefile_2_simplefault.py b/source_models/faults/shapefile2nrml/shapefile_2_simplefault.py
diff --git a/source_models/faults/shapefile2nrml/shapefile_2_simplefault_CE.py b/source_models/faults/shapefile2nrml/shapefile_2_simplefault_CE.py
diff --git a/source_models/faults/shapefile2nrml/shapefile_2_simplefault_MM.py b/source_models/faults/shapefile2nrml/shapefile_2_simplefault_MM.py
diff --git a/source_models/faults/shapefile2nrml/shp2nrml.py b/source_models/faults/shapefile2nrml/shp2nrml.py
diff --git a/source_models/faults/test_geom_filtering.py b/source_models/faults/test_geom_filtering.py
diff --git a/source_models/logic_trees/__init__.py b/source_models/logic_trees/__init__.py
diff --git a/source_models/logic_trees/build_logic_tree_weights.py b/source_models/logic_trees/build_logic_tree_weights.py
diff --git a/source_models/logic_trees/logic_tree.py b/source_models/logic_trees/logic_tree.py
diff --git a/source_models/logic_trees/nsha18_source_model_logic_tree.xml b/source_models/logic_trees/nsha18_source_model_logic_tree.xml
diff --git a/source_models/smoothed_seismicity/Cuthbertson2016/cuthbertson2016_source_model.xml b/source_models/smoothed_seismicity/Cuthbertson2016/cuthbertson2016_source_model.xml
diff --git a/...ce_models/smoothed_seismicity/Cuthbertson2016/cuthbertson2016_source_model_logic_tree.xml b/...ce_models/smoothed_seismicity/Cuthbertson2016/cuthbertson2016_source_model_logic_tree.xml
diff --git a/source_models/smoothed_seismicity/Cuthbertson2016/make_cuthbertson2016_model.py b/source_models/smoothed_seismicity/Cuthbertson2016/make_cuthbertson2016_model.py
diff --git a/source_models/smoothed_seismicity/GA_fixed/GA_fixed_source_model_logic_tree.xml b/source_models/smoothed_seismicity/GA_fixed/GA_fixed_source_model_logic_tree.xml
diff --git a/source_models/smoothed_seismicity/GA_fixed_NFSM/GA_fixed_source_model_logic_tree.xml b/source_models/smoothed_seismicity/GA_fixed_NFSM/GA_fixed_source_model_logic_tree.xml
diff --git a/source_models/smoothed_seismicity/Hall2007/Hall2007_source_model_logic_tree.xml b/source_models/smoothed_seismicity/Hall2007/Hall2007_source_model_logic_tree.xml
diff --git a/source_models/smoothed_seismicity/__init__.py b/source_models/smoothed_seismicity/__init__.py
diff --git a/source_models/smoothed_seismicity/combine_pt_model_simple.py b/source_models/smoothed_seismicity/combine_pt_model_simple.py
diff --git a/source_models/smoothed_seismicity/combine_ss_frankel_models.py b/source_models/smoothed_seismicity/combine_ss_frankel_models.py
diff --git a/source_models/smoothed_seismicity/combine_ss_models.py b/source_models/smoothed_seismicity/combine_ss_models.py
diff --git a/source_models/smoothed_seismicity/process_test_results.py b/source_models/smoothed_seismicity/process_test_results.py
diff --git a/source_models/smoothed_seismicity/run_adaptive.sh b/source_models/smoothed_seismicity/run_adaptive.sh
diff --git a/source_models/smoothed_seismicity/run_combine_pt.sh b/source_models/smoothed_seismicity/run_combine_pt.sh
diff --git a/source_models/smoothed_seismicity/run_combine_ss.sh b/source_models/smoothed_seismicity/run_combine_ss.sh
diff --git a/source_models/smoothed_seismicity/run_combine_ss_frankel.sh b/source_models/smoothed_seismicity/run_combine_ss_frankel.sh
diff --git a/source_models/smoothed_seismicity/run_frankel.sh b/source_models/smoothed_seismicity/run_frankel.sh
diff --git a/source_models/smoothed_seismicity/test_combining.py b/source_models/smoothed_seismicity/test_combining.py
diff --git a/...smoothed_seismicity/testing/Adaptive_best_b_M3_K4/GA_adaptive_source_model_logic_tree.xml b/...smoothed_seismicity/testing/Adaptive_best_b_M3_K4/GA_adaptive_source_model_logic_tree.xml
diff --git a/...d_seismicity/testing/Adaptive_best_b_M3_K4_faults/GA_adaptive_source_model_logic_tree.xml b/...d_seismicity/testing/Adaptive_best_b_M3_K4_faults/GA_adaptive_source_model_logic_tree.xml
diff --git a/...smoothed_seismicity/testing/Adaptive_best_b_M4_K4/GA_adaptive_source_model_logic_tree.xml b/...smoothed_seismicity/testing/Adaptive_best_b_M4_K4/GA_adaptive_source_model_logic_tree.xml
diff --git a/...d_seismicity/testing/Adaptive_best_b_M4_K4_faults/GA_adaptive_source_model_logic_tree.xml b/...d_seismicity/testing/Adaptive_best_b_M4_K4_faults/GA_adaptive_source_model_logic_tree.xml
diff --git a/source_models/utils/README.MD b/source_models/utils/README.MD
diff --git a/source_models/utils/__init__.py b/source_models/utils/__init__.py
diff --git a/source_models/utils/area_sources.py b/source_models/utils/area_sources.py
diff --git a/source_models/utils/nrml2shp.py b/source_models/utils/nrml2shp.py
diff --git a/source_models/utils/pt2fault_distance.py b/source_models/utils/pt2fault_distance.py
diff --git a/source_models/utils/pt_in_polygon.py b/source_models/utils/pt_in_polygon.py
diff --git a/source_models/utils/utils.py b/source_models/utils/utils.py
diff --git a/source_models/zones/2012_ml/ARUP/ARUP_NSHA18_MFD.MERGE.pdf b/source_models/zones/2012_ml/ARUP/ARUP_NSHA18_MFD.MERGE.pdf
diff --git a/source_models/zones/2012_ml/ARUP/ARUP_collapsed_rates_FF.xml b/source_models/zones/2012_ml/ARUP/ARUP_collapsed_rates_FF.xml
diff --git a/source_models/zones/2012_ml/ARUP/ARUP_source_model_logic_tree_FF.xml b/source_models/zones/2012_ml/ARUP/ARUP_source_model_logic_tree_FF.xml
diff --git a/source_models/zones/2012_ml/ARUP/arup.param b/source_models/zones/2012_ml/ARUP/arup.param
diff --git a/source_models/zones/2012_ml/ARUP/mfd/ZN1a/ZN1a_failed.dat b/source_models/zones/2012_ml/ARUP/mfd/ZN1a/ZN1a_failed.dat
diff --git a/source_models/zones/2012_ml/ARUP/mfd/ZN1a/ZN1a_passed.dat b/source_models/zones/2012_ml/ARUP/mfd/ZN1a/ZN1a_passed.dat
diff --git a/source_models/zones/2012_ml/ARUP/mfd/ZN1a/ZN1a_rates.csv b/source_models/zones/2012_ml/ARUP/mfd/ZN1a/ZN1a_rates.csv
diff --git a/source_models/zones/2012_ml/ARUP/mfd/ZN1b/ZN1b_failed.dat b/source_models/zones/2012_ml/ARUP/mfd/ZN1b/ZN1b_failed.dat
diff --git a/source_models/zones/2012_ml/ARUP/mfd/ZN1b/ZN1b_passed.dat b/source_models/zones/2012_ml/ARUP/mfd/ZN1b/ZN1b_passed.dat
diff --git a/source_models/zones/2012_ml/ARUP/mfd/ZN1b/ZN1b_rates.csv b/source_models/zones/2012_ml/ARUP/mfd/ZN1b/ZN1b_rates.csv
diff --git a/source_models/zones/2012_ml/ARUP/mfd/ZN2a/ZN2a_failed.dat b/source_models/zones/2012_ml/ARUP/mfd/ZN2a/ZN2a_failed.dat
diff --git a/source_models/zones/2012_ml/ARUP/mfd/ZN2a/ZN2a_passed.dat b/source_models/zones/2012_ml/ARUP/mfd/ZN2a/ZN2a_passed.dat
diff --git a/source_models/zones/2012_ml/ARUP/mfd/ZN2a/ZN2a_rates.csv b/source_models/zones/2012_ml/ARUP/mfd/ZN2a/ZN2a_rates.csv
diff --git a/source_models/zones/2012_ml/ARUP/mfd/ZN2b/ZN2b_failed.dat b/source_models/zones/2012_ml/ARUP/mfd/ZN2b/ZN2b_failed.dat
diff --git a/source_models/zones/2012_ml/ARUP/mfd/ZN2b/ZN2b_passed.dat b/source_models/zones/2012_ml/ARUP/mfd/ZN2b/ZN2b_passed.dat
diff --git a/source_models/zones/2012_ml/ARUP/mfd/ZN2b/ZN2b_rates.csv b/source_models/zones/2012_ml/ARUP/mfd/ZN2b/ZN2b_rates.csv
diff --git a/source_models/zones/2012_ml/ARUP/mfd/ZN3a/ZN3a_failed.dat b/source_models/zones/2012_ml/ARUP/mfd/ZN3a/ZN3a_failed.dat
diff --git a/source_models/zones/2012_ml/ARUP/mfd/ZN3a/ZN3a_passed.dat b/source_models/zones/2012_ml/ARUP/mfd/ZN3a/ZN3a_passed.dat
diff --git a/source_models/zones/2012_ml/ARUP/mfd/ZN3a/ZN3a_rates.csv b/source_models/zones/2012_ml/ARUP/mfd/ZN3a/ZN3a_rates.csv
diff --git a/source_models/zones/2012_ml/ARUP/mfd/ZN3b/ZN3b_failed.dat b/source_models/zones/2012_ml/ARUP/mfd/ZN3b/ZN3b_failed.dat
diff --git a/source_models/zones/2012_ml/ARUP/mfd/ZN3b/ZN3b_passed.dat b/source_models/zones/2012_ml/ARUP/mfd/ZN3b/ZN3b_passed.dat
diff --git a/source_models/zones/2012_ml/ARUP/mfd/ZN3b/ZN3b_rates.csv b/source_models/zones/2012_ml/ARUP/mfd/ZN3b/ZN3b_rates.csv
diff --git a/source_models/zones/2012_ml/ARUP/mfd/ZN3c/ZN3c_failed.dat b/source_models/zones/2012_ml/ARUP/mfd/ZN3c/ZN3c_failed.dat
diff --git a/source_models/zones/2012_ml/ARUP/mfd/ZN3c/ZN3c_passed.dat b/source_models/zones/2012_ml/ARUP/mfd/ZN3c/ZN3c_passed.dat
diff --git a/source_models/zones/2012_ml/ARUP/mfd/ZN3c/ZN3c_rates.csv b/source_models/zones/2012_ml/ARUP/mfd/ZN3c/ZN3c_rates.csv
diff --git a/source_models/zones/2012_ml/ARUP/mfd/ZN4a/ZN4a_failed.dat b/source_models/zones/2012_ml/ARUP/mfd/ZN4a/ZN4a_failed.dat
diff --git a/source_models/zones/2012_ml/ARUP/mfd/ZN4a/ZN4a_passed.dat b/source_models/zones/2012_ml/ARUP/mfd/ZN4a/ZN4a_passed.dat
diff --git a/source_models/zones/2012_ml/ARUP/mfd/ZN4a/ZN4a_rates.csv b/source_models/zones/2012_ml/ARUP/mfd/ZN4a/ZN4a_rates.csv
diff --git a/source_models/zones/2012_ml/ARUP/mfd/ZN4b/ZN4b_failed.dat b/source_models/zones/2012_ml/ARUP/mfd/ZN4b/ZN4b_failed.dat
diff --git a/source_models/zones/2012_ml/ARUP/mfd/ZN4b/ZN4b_passed.dat b/source_models/zones/2012_ml/ARUP/mfd/ZN4b/ZN4b_passed.dat
diff --git a/source_models/zones/2012_ml/ARUP/mfd/ZN4b/ZN4b_rates.csv b/source_models/zones/2012_ml/ARUP/mfd/ZN4b/ZN4b_rates.csv
diff --git a/source_models/zones/2012_ml/ARUP/mfd/ZN5/ZN5_failed.dat b/source_models/zones/2012_ml/ARUP/mfd/ZN5/ZN5_failed.dat
diff --git a/source_models/zones/2012_ml/ARUP/mfd/ZN5/ZN5_passed.dat b/source_models/zones/2012_ml/ARUP/mfd/ZN5/ZN5_passed.dat
diff --git a/source_models/zones/2012_ml/ARUP/mfd/ZN5/ZN5_rates.csv b/source_models/zones/2012_ml/ARUP/mfd/ZN5/ZN5_rates.csv
diff --git a/source_models/zones/2012_ml/ARUP/mfd/ZN6a/ZN6a_failed.dat b/source_models/zones/2012_ml/ARUP/mfd/ZN6a/ZN6a_failed.dat
diff --git a/source_models/zones/2012_ml/ARUP/mfd/ZN6a/ZN6a_passed.dat b/source_models/zones/2012_ml/ARUP/mfd/ZN6a/ZN6a_passed.dat
diff --git a/source_models/zones/2012_ml/ARUP/mfd/ZN6a/ZN6a_rates.csv b/source_models/zones/2012_ml/ARUP/mfd/ZN6a/ZN6a_rates.csv
diff --git a/source_models/zones/2012_ml/ARUP/mfd/ZN6b/ZN6b_failed.dat b/source_models/zones/2012_ml/ARUP/mfd/ZN6b/ZN6b_failed.dat
diff --git a/source_models/zones/2012_ml/ARUP/mfd/ZN6b/ZN6b_passed.dat b/source_models/zones/2012_ml/ARUP/mfd/ZN6b/ZN6b_passed.dat
diff --git a/source_models/zones/2012_ml/ARUP/mfd/ZN6b/ZN6b_rates.csv b/source_models/zones/2012_ml/ARUP/mfd/ZN6b/ZN6b_rates.csv
diff --git a/source_models/zones/2012_ml/ARUP/mfd/ZN7a/ZN7a_failed.dat b/source_models/zones/2012_ml/ARUP/mfd/ZN7a/ZN7a_failed.dat
diff --git a/source_models/zones/2012_ml/ARUP/mfd/ZN7a/ZN7a_passed.dat b/source_models/zones/2012_ml/ARUP/mfd/ZN7a/ZN7a_passed.dat
diff --git a/source_models/zones/2012_ml/ARUP/mfd/ZN7a/ZN7a_rates.csv b/source_models/zones/2012_ml/ARUP/mfd/ZN7a/ZN7a_rates.csv
diff --git a/source_models/zones/2012_ml/ARUP/mfd/ZN7b/ZN7b_failed.dat b/source_models/zones/2012_ml/ARUP/mfd/ZN7b/ZN7b_failed.dat
diff --git a/source_models/zones/2012_ml/ARUP/mfd/ZN7b/ZN7b_passed.dat b/source_models/zones/2012_ml/ARUP/mfd/ZN7b/ZN7b_passed.dat
diff --git a/source_models/zones/2012_ml/ARUP/mfd/ZN7b/ZN7b_rates.csv b/source_models/zones/2012_ml/ARUP/mfd/ZN7b/ZN7b_rates.csv
diff --git a/source_models/zones/2012_ml/ARUP/mfd/ZN7c/ZN7c_failed.dat b/source_models/zones/2012_ml/ARUP/mfd/ZN7c/ZN7c_failed.dat
diff --git a/source_models/zones/2012_ml/ARUP/mfd/ZN7c/ZN7c_passed.dat b/source_models/zones/2012_ml/ARUP/mfd/ZN7c/ZN7c_passed.dat
diff --git a/source_models/zones/2012_ml/ARUP/mfd/ZN7c/ZN7c_rates.csv b/source_models/zones/2012_ml/ARUP/mfd/ZN7c/ZN7c_rates.csv
diff --git a/source_models/zones/2012_ml/ARUP/mfd/ZN7d/ZN7d_failed.dat b/source_models/zones/2012_ml/ARUP/mfd/ZN7d/ZN7d_failed.dat
diff --git a/source_models/zones/2012_ml/ARUP/mfd/ZN7d/ZN7d_passed.dat b/source_models/zones/2012_ml/ARUP/mfd/ZN7d/ZN7d_passed.dat
diff --git a/source_models/zones/2012_ml/ARUP/mfd/ZN7d/ZN7d_rates.csv b/source_models/zones/2012_ml/ARUP/mfd/ZN7d/ZN7d_rates.csv
diff --git a/source_models/zones/2012_ml/ARUP/mfd/ZN8a/ZN8a_failed.dat b/source_models/zones/2012_ml/ARUP/mfd/ZN8a/ZN8a_failed.dat
diff --git a/source_models/zones/2012_ml/ARUP/mfd/ZN8a/ZN8a_passed.dat b/source_models/zones/2012_ml/ARUP/mfd/ZN8a/ZN8a_passed.dat
diff --git a/source_models/zones/2012_ml/ARUP/mfd/ZN8a/ZN8a_rates.csv b/source_models/zones/2012_ml/ARUP/mfd/ZN8a/ZN8a_rates.csv
diff --git a/source_models/zones/2012_ml/ARUP/mfd/ZN8b/ZN8b_failed.dat b/source_models/zones/2012_ml/ARUP/mfd/ZN8b/ZN8b_failed.dat
diff --git a/source_models/zones/2012_ml/ARUP/mfd/ZN8b/ZN8b_passed.dat b/source_models/zones/2012_ml/ARUP/mfd/ZN8b/ZN8b_passed.dat
diff --git a/source_models/zones/2012_ml/ARUP/mfd/ZN8b/ZN8b_rates.csv b/source_models/zones/2012_ml/ARUP/mfd/ZN8b/ZN8b_rates.csv
diff --git a/source_models/zones/2012_ml/ARUP/shapefiles/ARUP_NSHA18_MFD.dbf b/source_models/zones/2012_ml/ARUP/shapefiles/ARUP_NSHA18_MFD.dbf
diff --git a/source_models/zones/2012_ml/ARUP/shapefiles/ARUP_NSHA18_MFD.prj b/source_models/zones/2012_ml/ARUP/shapefiles/ARUP_NSHA18_MFD.prj
diff --git a/source_models/zones/2012_ml/ARUP/shapefiles/ARUP_NSHA18_MFD.shp b/source_models/zones/2012_ml/ARUP/shapefiles/ARUP_NSHA18_MFD.shp
diff --git a/source_models/zones/2012_ml/ARUP/shapefiles/ARUP_NSHA18_MFD.shx b/source_models/zones/2012_ml/ARUP/shapefiles/ARUP_NSHA18_MFD.shx
diff --git a/source_models/zones/2012_ml/ARUP_Background/ARUP_Background_NSHA18_MFD.MERGE.pdf b/source_models/zones/2012_ml/ARUP_Background/ARUP_Background_NSHA18_MFD.MERGE.pdf
diff --git a/source_models/zones/2012_ml/ARUP_Background/ARUP_Background_collapsed_rates_FF.xml b/source_models/zones/2012_ml/ARUP_Background/ARUP_Background_collapsed_rates_FF.xml
diff --git a/source_models/zones/2012_ml/ARUP_Background/ARUP_Background_source_model_logic_tree_FF.xml b/source_models/zones/2012_ml/ARUP_Background/ARUP_Background_source_model_logic_tree_FF.xml
diff --git a/source_models/zones/2012_ml/ARUP_Background/arup_background.param b/source_models/zones/2012_ml/ARUP_Background/arup_background.param
diff --git a/source_models/zones/2012_ml/ARUP_Background/mfd/ZN1a/ZN1a_failed.dat b/source_models/zones/2012_ml/ARUP_Background/mfd/ZN1a/ZN1a_failed.dat
diff --git a/source_models/zones/2012_ml/ARUP_Background/mfd/ZN1a/ZN1a_passed.dat b/source_models/zones/2012_ml/ARUP_Background/mfd/ZN1a/ZN1a_passed.dat
diff --git a/source_models/zones/2012_ml/ARUP_Background/mfd/ZN1a/ZN1a_rates.csv b/source_models/zones/2012_ml/ARUP_Background/mfd/ZN1a/ZN1a_rates.csv
diff --git a/source_models/zones/2012_ml/ARUP_Background/mfd/ZN1b/ZN1b_failed.dat b/source_models/zones/2012_ml/ARUP_Background/mfd/ZN1b/ZN1b_failed.dat
diff --git a/source_models/zones/2012_ml/ARUP_Background/mfd/ZN1b/ZN1b_passed.dat b/source_models/zones/2012_ml/ARUP_Background/mfd/ZN1b/ZN1b_passed.dat
diff --git a/source_models/zones/2012_ml/ARUP_Background/mfd/ZN1b/ZN1b_rates.csv b/source_models/zones/2012_ml/ARUP_Background/mfd/ZN1b/ZN1b_rates.csv
diff --git a/source_models/zones/2012_ml/ARUP_Background/mfd/ZN2/ZN2_failed.dat b/source_models/zones/2012_ml/ARUP_Background/mfd/ZN2/ZN2_failed.dat
diff --git a/source_models/zones/2012_ml/ARUP_Background/mfd/ZN2/ZN2_passed.dat b/source_models/zones/2012_ml/ARUP_Background/mfd/ZN2/ZN2_passed.dat
diff --git a/source_models/zones/2012_ml/ARUP_Background/mfd/ZN2/ZN2_rates.csv b/source_models/zones/2012_ml/ARUP_Background/mfd/ZN2/ZN2_rates.csv
diff --git a/source_models/zones/2012_ml/ARUP_Background/mfd/ZN3a/ZN3a_failed.dat b/source_models/zones/2012_ml/ARUP_Background/mfd/ZN3a/ZN3a_failed.dat
diff --git a/source_models/zones/2012_ml/ARUP_Background/mfd/ZN3a/ZN3a_passed.dat b/source_models/zones/2012_ml/ARUP_Background/mfd/ZN3a/ZN3a_passed.dat
diff --git a/source_models/zones/2012_ml/ARUP_Background/mfd/ZN3a/ZN3a_rates.csv b/source_models/zones/2012_ml/ARUP_Background/mfd/ZN3a/ZN3a_rates.csv
diff --git a/source_models/zones/2012_ml/ARUP_Background/mfd/ZN3b/ZN3b_failed.dat b/source_models/zones/2012_ml/ARUP_Background/mfd/ZN3b/ZN3b_failed.dat
diff --git a/source_models/zones/2012_ml/ARUP_Background/mfd/ZN3b/ZN3b_passed.dat b/source_models/zones/2012_ml/ARUP_Background/mfd/ZN3b/ZN3b_passed.dat
diff --git a/source_models/zones/2012_ml/ARUP_Background/mfd/ZN3b/ZN3b_rates.csv b/source_models/zones/2012_ml/ARUP_Background/mfd/ZN3b/ZN3b_rates.csv
diff --git a/source_models/zones/2012_ml/ARUP_Background/mfd/ZN4/ZN4_failed.dat b/source_models/zones/2012_ml/ARUP_Background/mfd/ZN4/ZN4_failed.dat
diff --git a/source_models/zones/2012_ml/ARUP_Background/mfd/ZN4/ZN4_passed.dat b/source_models/zones/2012_ml/ARUP_Background/mfd/ZN4/ZN4_passed.dat
diff --git a/source_models/zones/2012_ml/ARUP_Background/mfd/ZN4/ZN4_rates.csv b/source_models/zones/2012_ml/ARUP_Background/mfd/ZN4/ZN4_rates.csv
diff --git a/source_models/zones/2012_ml/ARUP_Background/mfd/ZN5/ZN5_failed.dat b/source_models/zones/2012_ml/ARUP_Background/mfd/ZN5/ZN5_failed.dat
diff --git a/source_models/zones/2012_ml/ARUP_Background/mfd/ZN5/ZN5_passed.dat b/source_models/zones/2012_ml/ARUP_Background/mfd/ZN5/ZN5_passed.dat
diff --git a/source_models/zones/2012_ml/ARUP_Background/mfd/ZN5/ZN5_rates.csv b/source_models/zones/2012_ml/ARUP_Background/mfd/ZN5/ZN5_rates.csv
diff --git a/source_models/zones/2012_ml/ARUP_Background/mfd/ZN6/ZN6_failed.dat b/source_models/zones/2012_ml/ARUP_Background/mfd/ZN6/ZN6_failed.dat
diff --git a/source_models/zones/2012_ml/ARUP_Background/mfd/ZN6/ZN6_passed.dat b/source_models/zones/2012_ml/ARUP_Background/mfd/ZN6/ZN6_passed.dat
diff --git a/source_models/zones/2012_ml/ARUP_Background/mfd/ZN6/ZN6_rates.csv b/source_models/zones/2012_ml/ARUP_Background/mfd/ZN6/ZN6_rates.csv
diff --git a/source_models/zones/2012_ml/ARUP_Background/mfd/ZN7a/ZN7a_failed.dat b/source_models/zones/2012_ml/ARUP_Background/mfd/ZN7a/ZN7a_failed.dat
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diff --git a/source_models/zones/2012_ml/ARUP_Background/mfd/ZN7a/ZN7a_rates.csv b/source_models/zones/2012_ml/ARUP_Background/mfd/ZN7a/ZN7a_rates.csv
diff --git a/source_models/zones/2012_ml/ARUP_Background/mfd/ZN7b/ZN7b_failed.dat b/source_models/zones/2012_ml/ARUP_Background/mfd/ZN7b/ZN7b_failed.dat
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diff --git a/source_models/zones/2012_ml/ARUP_Background/mfd/ZN7b/ZN7b_rates.csv b/source_models/zones/2012_ml/ARUP_Background/mfd/ZN7b/ZN7b_rates.csv
diff --git a/source_models/zones/2012_ml/ARUP_Background/mfd/ZN7c/ZN7c_failed.dat b/source_models/zones/2012_ml/ARUP_Background/mfd/ZN7c/ZN7c_failed.dat
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diff --git a/source_models/zones/2012_ml/ARUP_Background/mfd/ZN7c/ZN7c_rates.csv b/source_models/zones/2012_ml/ARUP_Background/mfd/ZN7c/ZN7c_rates.csv
diff --git a/source_models/zones/2012_ml/ARUP_Background/mfd/ZN8/ZN8_failed.dat b/source_models/zones/2012_ml/ARUP_Background/mfd/ZN8/ZN8_failed.dat
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diff --git a/source_models/zones/2012_ml/ARUP_Background/mfd/ZN8/ZN8_rates.csv b/source_models/zones/2012_ml/ARUP_Background/mfd/ZN8/ZN8_rates.csv
diff --git a/source_models/zones/2012_ml/ARUP_Background/shapefiles/ARUP_Background_NSHA18_MFD.dbf b/source_models/zones/2012_ml/ARUP_Background/shapefiles/ARUP_Background_NSHA18_MFD.dbf
diff --git a/source_models/zones/2012_ml/ARUP_Background/shapefiles/ARUP_Background_NSHA18_MFD.prj b/source_models/zones/2012_ml/ARUP_Background/shapefiles/ARUP_Background_NSHA18_MFD.prj
diff --git a/source_models/zones/2012_ml/ARUP_Background/shapefiles/ARUP_Background_NSHA18_MFD.shp b/source_models/zones/2012_ml/ARUP_Background/shapefiles/ARUP_Background_NSHA18_MFD.shp
diff --git a/source_models/zones/2012_ml/ARUP_Background/shapefiles/ARUP_Background_NSHA18_MFD.shx b/source_models/zones/2012_ml/ARUP_Background/shapefiles/ARUP_Background_NSHA18_MFD.shx
diff --git a/source_models/zones/2012_ml/Leonard2008/LEONARD08_NSHA18_MFD.MERGE.pdf b/source_models/zones/2012_ml/Leonard2008/LEONARD08_NSHA18_MFD.MERGE.pdf
diff --git a/source_models/zones/2012_ml/Leonard2008/Leonard2008_collapsed_rates_FF.xml b/source_models/zones/2012_ml/Leonard2008/Leonard2008_collapsed_rates_FF.xml
diff --git a/source_models/zones/2012_ml/Leonard2008/Leonard2008_source_model_logic_tree_FF.xml b/source_models/zones/2012_ml/Leonard2008/Leonard2008_source_model_logic_tree_FF.xml
diff --git a/source_models/zones/2012_ml/Leonard2008/mfd/NA_1/NA_1_failed.dat b/source_models/zones/2012_ml/Leonard2008/mfd/NA_1/NA_1_failed.dat
diff --git a/source_models/zones/2012_ml/Leonard2008/mfd/NA_1/NA_1_passed.dat b/source_models/zones/2012_ml/Leonard2008/mfd/NA_1/NA_1_passed.dat
diff --git a/source_models/zones/2012_ml/Leonard2008/mfd/NA_1/NA_1_rates.csv b/source_models/zones/2012_ml/Leonard2008/mfd/NA_1/NA_1_rates.csv
diff --git a/source_models/zones/2012_ml/Leonard2008/mfd/NA_2/NA_2_failed.dat b/source_models/zones/2012_ml/Leonard2008/mfd/NA_2/NA_2_failed.dat
diff --git a/source_models/zones/2012_ml/Leonard2008/mfd/NA_2/NA_2_passed.dat b/source_models/zones/2012_ml/Leonard2008/mfd/NA_2/NA_2_passed.dat
diff --git a/source_models/zones/2012_ml/Leonard2008/mfd/NA_2/NA_2_rates.csv b/source_models/zones/2012_ml/Leonard2008/mfd/NA_2/NA_2_rates.csv
diff --git a/source_models/zones/2012_ml/Leonard2008/mfd/NA_3/NA_3_failed.dat b/source_models/zones/2012_ml/Leonard2008/mfd/NA_3/NA_3_failed.dat
diff --git a/source_models/zones/2012_ml/Leonard2008/mfd/NA_3/NA_3_passed.dat b/source_models/zones/2012_ml/Leonard2008/mfd/NA_3/NA_3_passed.dat
diff --git a/source_models/zones/2012_ml/Leonard2008/mfd/NA_3/NA_3_rates.csv b/source_models/zones/2012_ml/Leonard2008/mfd/NA_3/NA_3_rates.csv
diff --git a/source_models/zones/2012_ml/Leonard2008/mfd/NA_4/NA_4_failed.dat b/source_models/zones/2012_ml/Leonard2008/mfd/NA_4/NA_4_failed.dat
diff --git a/source_models/zones/2012_ml/Leonard2008/mfd/NA_4/NA_4_passed.dat b/source_models/zones/2012_ml/Leonard2008/mfd/NA_4/NA_4_passed.dat
diff --git a/source_models/zones/2012_ml/Leonard2008/mfd/NA_4/NA_4_rates.csv b/source_models/zones/2012_ml/Leonard2008/mfd/NA_4/NA_4_rates.csv
diff --git a/source_models/zones/2012_ml/Leonard2008/mfd/NWA/NWA_failed.dat b/source_models/zones/2012_ml/Leonard2008/mfd/NWA/NWA_failed.dat
diff --git a/source_models/zones/2012_ml/Leonard2008/mfd/NWA/NWA_passed.dat b/source_models/zones/2012_ml/Leonard2008/mfd/NWA/NWA_passed.dat
diff --git a/source_models/zones/2012_ml/Leonard2008/mfd/NWA/NWA_rates.csv b/source_models/zones/2012_ml/Leonard2008/mfd/NWA/NWA_rates.csv
diff --git a/source_models/zones/2012_ml/Leonard2008/mfd/SA/SA_failed.dat b/source_models/zones/2012_ml/Leonard2008/mfd/SA/SA_failed.dat
diff --git a/source_models/zones/2012_ml/Leonard2008/mfd/SA/SA_passed.dat b/source_models/zones/2012_ml/Leonard2008/mfd/SA/SA_passed.dat
diff --git a/source_models/zones/2012_ml/Leonard2008/mfd/SA/SA_rates.csv b/source_models/zones/2012_ml/Leonard2008/mfd/SA/SA_rates.csv
diff --git a/source_models/zones/2012_ml/Leonard2008/mfd/SEA/SEA_failed.dat b/source_models/zones/2012_ml/Leonard2008/mfd/SEA/SEA_failed.dat
diff --git a/source_models/zones/2012_ml/Leonard2008/mfd/SEA/SEA_passed.dat b/source_models/zones/2012_ml/Leonard2008/mfd/SEA/SEA_passed.dat
diff --git a/source_models/zones/2012_ml/Leonard2008/mfd/SEA/SEA_rates.csv b/source_models/zones/2012_ml/Leonard2008/mfd/SEA/SEA_rates.csv
diff --git a/source_models/zones/2012_ml/Leonard2008/mfd/SWA/SWA_failed.dat b/source_models/zones/2012_ml/Leonard2008/mfd/SWA/SWA_failed.dat
diff --git a/source_models/zones/2012_ml/Leonard2008/mfd/SWA/SWA_passed.dat b/source_models/zones/2012_ml/Leonard2008/mfd/SWA/SWA_passed.dat
diff --git a/source_models/zones/2012_ml/Leonard2008/mfd/SWA/SWA_rates.csv b/source_models/zones/2012_ml/Leonard2008/mfd/SWA/SWA_rates.csv
diff --git a/source_models/zones/2012_ml/Leonard2008/shapefiles/LEONARD08_NSHA18_MFD.dbf b/source_models/zones/2012_ml/Leonard2008/shapefiles/LEONARD08_NSHA18_MFD.dbf
diff --git a/source_models/zones/2012_ml/Leonard2008/shapefiles/LEONARD08_NSHA18_MFD.prj b/source_models/zones/2012_ml/Leonard2008/shapefiles/LEONARD08_NSHA18_MFD.prj
diff --git a/source_models/zones/2012_ml/Leonard2008/shapefiles/LEONARD08_NSHA18_MFD.shp b/source_models/zones/2012_ml/Leonard2008/shapefiles/LEONARD08_NSHA18_MFD.shp
diff --git a/source_models/zones/2012_ml/Leonard2008/shapefiles/LEONARD08_NSHA18_MFD.shx b/source_models/zones/2012_ml/Leonard2008/shapefiles/LEONARD08_NSHA18_MFD.shx
diff --git a/source_models/zones/2012_ml/NSHA13/NSHA13_NSHA18_MFD.MERGE.pdf b/source_models/zones/2012_ml/NSHA13/NSHA13_NSHA18_MFD.MERGE.pdf
diff --git a/source_models/zones/2012_ml/NSHA13/input/collapsed/NSHA13_collapsed.xml b/source_models/zones/2012_ml/NSHA13/input/collapsed/NSHA13_collapsed.xml