Remove email address #885
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| on: | |
| push: | |
| branches: | |
| - '*' | |
| workflow_dispatch: | |
| # pull_request: | |
| # branches: | |
| # - master | |
| jobs: | |
| R-CMD-check: | |
| # If the commit message isn't [skip ci] | |
| if: "!contains(github.event.commits[0].message, '[skip ci]')" | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: windows-latest, r: 'release'} | |
| - {os: macOS-latest, r: 'release'} | |
| - {os: ubuntu-latest, r: 'release'} | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| http-user-agent: ${{ matrix.config.http-user-agent }} | |
| use-public-rspm: true | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: | | |
| rcmdcheck | |
| remotes | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.12' | |
| - name: Checkout FAIRDataPipeline/FAIR-CLI | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: FAIRDataPipeline/FAIR-CLI | |
| path: FAIR-CLI | |
| - name: Move FAIR-CLI | |
| run: mv FAIR-CLI ../FAIR-CLI | |
| - name: Install Poetry | |
| uses: snok/install-poetry@v1 | |
| with: | |
| virtualenvs-create: true | |
| virtualenvs-in-project: true | |
| - name: Install and initialise FAIR CLI | |
| run: | | |
| cd ../FAIR-CLI | |
| poetry install | |
| source $VENV | |
| cd '${{ github.workspace }}' | |
| fair registry install --version main | |
| fair init --ci | |
| fair registry start | |
| shell: bash | |
| - name: Copy token on windows | |
| run: | | |
| mkdir -p C:/Users/runneradmin/Documents/.fair/registry/ | |
| cp C:/Users/runneradmin/.fair/registry/token C:/Users/runneradmin/Documents/.fair/registry/token | |
| shell: bash | |
| if: runner.os == 'Windows' | |
| - name: Install R API system requirements (macOS-latest) | |
| if: runner.os == 'macOS' | |
| run : | | |
| brew install hdf5 | |
| brew install gdal | |
| - name: Check | |
| env: | |
| _R_CHECK_CRAN_INCOMING_: false | |
| _RUN_TESTS_: true | |
| run: | | |
| options(crayon.enabled = TRUE) | |
| rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "warning", check_dir = "check") | |
| shell: Rscript {0} | |
| - name: Show testthat output | |
| if: ${{ !cancelled() }} | |
| run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true | |
| shell: bash | |
| - name: Upload check results | |
| if: failure() | |
| uses: actions/upload-artifact@main | |
| with: | |
| name: ${{ runner.os }}-r${{ matrix.config.r }}-results | |
| path: check |