This is the current development version of EvoNetHIV, an R package for modeling HIV epidemics and viral evolution in sexual networks.
The package uses the API (application programming interface) of the R package EpiModel (http://www.epimodel.org/), and the methods and syntax from the statnet suite of R packages (http://www.statnet.org/).
This project is supported by grants from the National Institutes of Health (NIAD R01AI108490 and NIGMS R01GM125440 (via MIDAS)) and the Center for Studies in Demography and Ecology at the University of Washington (https://csde.washington.edu/).
- John E. Mittler [email protected]
- Steven M. Goodreau [email protected]
- Joshua T. Herbeck [email protected]
- James T. Murphy [email protected]
- Kathryn C. Peebles [email protected]
- Sarah E. Stansfield [email protected]
- Molly C. Reid [email protected]
- Neil F. Abernethy [email protected]
- Juandalyn C. Burke [email protected]
- Geoffrey S. Gottlieb [email protected]
- Sam Jenness [email protected]
Model overview
Model details
Quick start I: run a simple model
Quick start II: a few more details
Output plots
Using loops to run experiments
Concurrency example
Treatment example
Output overview
Transmission details
Viral load and CD4 progression
Overview of EvoNet functions