Name	Name	Last commit message	Last commit date
Latest commit dependabot[bot] Bump actions/cache from 3.0.1 to 3.0.3 (#66 ) Jun 1, 2022 05fc752 · Jun 1, 2022 History 224 Commits
.github	.github	Bump actions/cache from 3.0.1 to 3.0.3 (#66 )	Jun 1, 2022
child_Rmds	child_Rmds	Update capstone project instructions and timeline	Mar 18, 2022
data	data	Add uniprot lineage files for tutorial	Mar 23, 2022
images	images	Updating tutorial commands for compatability with TreeSAPP v0.11.3 (#56 )	Mar 13, 2022
renv	renv	Manage hidden dependencies in `DESCRIPTION`	Feb 14, 2022
templates	templates	Add .bashrc template	Feb 20, 2021
.Rbuildignore	.Rbuildignore	Implement renv in GHA updated with Dependabot	Aug 19, 2021
.Rprofile	.Rprofile	Implement renv in GHA updated with Dependabot	Aug 19, 2021
.gitignore	.gitignore	feat: R basic automation (#50 )	Feb 9, 2022
.renvignore	.renvignore	Manage hidden dependencies in `DESCRIPTION`	Feb 14, 2022
CODEOWNERS	CODEOWNERS	Change global code owners	Jan 4, 2022
CONTRIBUTING.md	CONTRIBUTING.md	Add documentation and change GHA	Jan 28, 2021
DESCRIPTION	DESCRIPTION	Manage hidden dependencies in `DESCRIPTION`	Feb 14, 2022
MICB425.Rproj	MICB425.Rproj	Add bookdown of MICB425 capstone project	Jan 21, 2021
R-basic-automation.Rmd	R-basic-automation.Rmd	Fix formatting & prevent infinite loop evaluation	Feb 15, 2022
README.md	README.md	Add documentation and change GHA	Jan 28, 2021
_bookdown.yml	_bookdown.yml	Include FAQ and more information for running TreeSAPP on the server	Apr 13, 2022
_output.yml	_output.yml	Fix citations and add repo information	Aug 20, 2021
american-society-for-microbiology.csl	american-society-for-microbiology.csl	Add bookdown of MICB425 capstone project	Jan 21, 2021
appendix.Rmd	appendix.Rmd	Reorganize bookdown	Mar 6, 2021
assessment.Rmd	assessment.Rmd	Update instructions and refactor tables	Mar 9, 2021
book.bib	book.bib	Updating tutorial commands for compatability with TreeSAPP v0.11.3 (#56 )	Mar 13, 2022
cheat_sheet.Rmd	cheat_sheet.Rmd	Add cheat sheet for shell commands	Mar 6, 2021
data.Rmd	data.Rmd	Add total number of MAGs and SAGs to Methods Section	Apr 12, 2021
faq.Rmd	faq.Rmd	Include FAQ and more information for running TreeSAPP on the server	Apr 13, 2022
golden_data.Rmd	golden_data.Rmd	Update server tutorial directory path to fix typo	Mar 25, 2022
index.Rmd	index.Rmd	Updating tutorial commands for compatability with TreeSAPP v0.11.3 (#56 )	Mar 13, 2022
instructions.Rmd	instructions.Rmd	Update capstone project instructions and timeline	Mar 18, 2022
introduction.Rmd	introduction.Rmd	Fix images layout and delete obsolete ones	Aug 20, 2021
part_capstone.Rmd	part_capstone.Rmd	Reorganize bookdown	Mar 6, 2021
part_introduction.Rmd	part_introduction.Rmd	Reorganize bookdown	Mar 6, 2021
part_tutorials.Rmd	part_tutorials.Rmd	Reorganize bookdown	Mar 6, 2021
references.Rmd	references.Rmd	Fix formatting	Mar 17, 2021
refpkgs.Rmd	refpkgs.Rmd	Fix table format	Mar 16, 2021
renv.lock	renv.lock	Manage hidden dependencies in `DESCRIPTION`	Feb 14, 2022
shell.Rmd	shell.Rmd	Include FAQ and more information for running TreeSAPP on the server	Apr 13, 2022
treesapp_R.Rmd	treesapp_R.Rmd	Updating tutorial commands for compatability with TreeSAPP v0.11.3 (#56 )	Mar 13, 2022
treesapp_abundance.Rmd	treesapp_abundance.Rmd	Update server tutorial directory path to fix typo	Mar 25, 2022
treesapp_analysis.R	treesapp_analysis.R	TreeSAPP data exploration in R (#34 )	Mar 29, 2021
treesapp_assign_and_update.Rmd	treesapp_assign_and_update.Rmd	Update treesapp_assign_and_update.Rmd	Apr 7, 2022
treesapp_create.Rmd	treesapp_create.Rmd	Update server tutorial directory path to fix typo	Mar 25, 2022
tutorials_intro.Rmd	tutorials_intro.Rmd	Updating tutorial commands for compatability with TreeSAPP v0.11.3 (#56 )	Mar 13, 2022
under_construction.Rmd	under_construction.Rmd	Set up under construction message	Mar 6, 2021

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