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Discovering known and novel miRNAs from small RNA sequencing data - updated scripts before release

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Drmirdeep/mirdeep2_patch

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mirdeep2_patch

updated mirdeep2 scripts to improve performance

please consider the files here as being still in a testing phase/likely outdated by now since the files were made in 2017.

To pull all files from this repository do

git clone https://github.com/Drmirdeep/mirdeep2_patch.git

The release packages of miRDeep2 are availabe at

https://github.com/rajewsky-lab/mirdeep2

A miRDeep2 tutorial can be found here

https://drmirdeep.github.io/mirdeep2_tutorial.html

Please cite

Friedlaender M.R.; Mackowiak S.D.; Li N.; Chen W.; Rajewsky N. miRDeep2 accurately identifies known and hundreds of novel microrna genes in seven animal clades, Nucleic Acids Research, vol. 40, pp. 37–52, Jan 2012

when using miRDeep2 in a publication.

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