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Merge Feature/docs into main#45

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Erik-Geo merged 144 commits intomainDeltares-research/geost:mainfrom feature/docsDeltares-research/geost:feature/docsCopy head branch name to clipboardDec 19, 2024

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Commits on Oct 23, 2024

• Added myst-parser; added changelong.md

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• Test

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• Small changes

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• Add Geost introduction

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• Merge branch 'feature/docs' of https://github.com/Deltares-research/geost into feature/docs

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• Merge branch 'feature/docs' of github.com:Deltares-research/geost into feature/docs

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• Basic structure of site

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• Start structure of API reference

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• Start API reference

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• Include extension for API reference

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• Merge branch 'feature/docs' of https://github.com/Deltares-research/geost into feature/docs

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• Add 'generated' folder in api_reference to .gitignore

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• Remove unnecessary level of nesting with documentation

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• Added sphinx-design; improved landing page

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• Merge branch 'feature/docs' of https://github.com/Deltares-research/geost into feature/docs

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• Add LayeredData methods to API reference

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• Added examples page; added grid gallery to index

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• Merge branch 'feature/docs' of https://github.com/Deltares-research/geost into feature/docs

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Commits on Oct 24, 2024

• Add BRO, GeoTop and VoxelModel to docs

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• Add Analysis and Utils to API reference

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• Start introduction to GeoST

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Commits on Oct 25, 2024

• Test info box

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Commits on Nov 6, 2024

• Added about section; prepared gh-pages deployment

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• Merge branch 'feature/docs' of https://github.com/Deltares-research/geost into feature/docs

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• Add data import

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• Add task to rebuild docs which also removes directories build/ and jupyter_execute/

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• Add selections and slices

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Commits on Nov 7, 2024

• added write-all access to GITHUB_TOKEN

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• Merge branch 'feature/docs' of https://github.com/Deltares-research/geost into feature/docs

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Commits on Nov 11, 2024

• Added BRO soil core analysis example to documentation

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Commits on Nov 12, 2024

• Add example combine_geotop_with_cpts

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• Started work on community page

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• Merge branch 'feature/docs' of https://github.com/Deltares-research/geost into feature/docs

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• Added description to geotop-cpt example

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Commits on Nov 19, 2024

• Fixed links to predict sand thickness example; removed optional dev dependencies in project toml.

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Commits on Nov 20, 2024

• Remove pixi.lock; unfreeze versions pyproject.toml

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• Merge branch 'main' into feature/docs

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• Removed basics tutorial

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• Add CPT tutorial data for usp

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• Add CPT tutorial data for usp

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• Merge branch 'feature/docs' of https://github.com/Deltares-research/geost into feature/docs

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• Accept float in cast_to_list; update docstring

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• Started on reading data user guide

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• Update with combine geotop with CPT data example with sample data cpts_usp

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• Rename cumulative_layer_thickness; Add bro_geotop as separate page to API reference.

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• Added table with supported formats to reading data guide

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• Update VoxelModel.from_netcdf doc

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• Reading data user guide finished

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Commits on Nov 21, 2024

• Add select_by_condition, slice_depth_interval and tests; docstring updates

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• Override slice_depth_interval in CptCollection for unused keyword argument

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Commits on Nov 22, 2024

• Fix small edit in slice_depth_interval

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• Add label_consecutive_2d to model_utils; Include adding boundaries of repeating layers in add_voxelmodel_variable

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• Overwrite column if already present in collection.data with add_voxelmodel_variable

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Commits on Nov 26, 2024

• Add read_pickle, Collection.to_pickle and save_pickle

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• Write both header and data as layers in Collection.to_geopackage

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Commits on Nov 27, 2024

• Add read_collection_geopackage

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• Fix toctree warnings for docs

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• Add analysis and util functions to API reference

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• Add UnitEnum.to_dict; add UnitEnum to API reference

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• Update combine geotop strat example; Fix dx, dy mixup in VoxelModel resolution; add from geost.bro Lithology import

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• Sort GeoTop selection/mapping classes in API reference; Add BRO GeoTop to user guide

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• Add resolution note; small change in order of things

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• Improved data structures guide

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• Small docstring update

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Commits on Dec 6, 2024

• Select overlapping cells in bounding box selection with GeoTop.from_netcdf, from_opendap

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Commits on Dec 11, 2024

• Small text changes to the "about"

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Commits on Dec 13, 2024

• Fix depth problem with find_top_sand

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Commits on Dec 16, 2024

• Allow finding of multiple labels in get_area_labels

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• Corrected collection.get_area_labels docstr, small textual change in about page

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Commits on Dec 19, 2024

• Implement _clone_with_attrs method for Collection class to improve attribute updating and safety in selection and slicing operations.

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• Refactor _clone_with_attrs method to create a deep copy of the Collection object for improved data integrity during modifications.

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• Update documentation and workflow for GeoST release v0.2.5

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• Fix typo in documentation about subsurface data tool functionality

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• Fixed linting issues

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