Added exceptions for coverage of not implemented classes and functions

geost/abstract_classes.py

@@ -1,7 +1,7 @@
 from abc import ABC, abstractmethod
 
 
-class AbstractHeader(ABC):
+class AbstractHeader(ABC):  # pragma: no cover
     @property
     @abstractmethod
     def gdf(self):
@@ -63,7 +63,7 @@ def get_area_labels(self):
         pass
 
 
-class AbstractData(ABC):
+class AbstractData(ABC):  # pragma: no cover
     @property
     @abstractmethod
     def df(self):
@@ -126,7 +126,7 @@ def to_datafusiontools(self):
         pass
 
 
-class AbstractCollection(ABC):
+class AbstractCollection(ABC):  # pragma: no cover
     @property
     @abstractmethod
     def header(self):

geost/base.py

@@ -441,7 +441,7 @@ def get_area_labels(
             return area_labels
 
 
-class LineHeader(AbstractHeader, GeopandasExportMixin):
+class LineHeader(AbstractHeader, GeopandasExportMixin):  # pragma: no cover
     def __init__(self, gdf, vertical_reference: str | int | CRS):
         self.gdf = gdf
         self.__vertical_reference = CRS(vertical_reference)
@@ -1371,28 +1371,28 @@ def select_by_values(
 
         return self.__class__(selected, self.has_inclined)
 
-    def slice_depth_interval(self):
+    def slice_depth_interval(self):  # pragma: no cover
         raise NotImplementedError()
 
-    def slice_by_values(self):
+    def slice_by_values(self):  # pragma: no cover
         raise NotImplementedError()
 
-    def select_by_condition(self):
+    def select_by_condition(self):  # pragma: no cover
         raise NotImplementedError()
 
-    def get_cumulative_layer_thickness(self):
+    def get_cumulative_layer_thickness(self):  # pragma: no cover
         raise NotImplementedError()
 
-    def get_layer_top(self):
+    def get_layer_top(self):  # pragma: no cover
         raise NotImplementedError()
 
-    def to_vtm(self):
+    def to_vtm(self):  # pragma: no cover
         raise NotImplementedError()
 
-    def to_datafusiontools(self):
+    def to_datafusiontools(self):  # pragma: no cover
         raise NotImplementedError()
 
-    def to_multiblock(self):
+    def to_multiblock(self):  # pragma: no cover
         raise NotImplementedError()
 
 
@@ -2471,7 +2471,7 @@ def get_layer_top(self):
         raise NotImplementedError()
 
 
-class LogCollection(Collection):
+class LogCollection(Collection):  # pragma: no cover
     def get_cumulative_layer_thickness(self):
         raise NotImplementedError()
 

geost/bro/bro_models.py

@@ -109,5 +109,5 @@ def from_opendap(
         return cls.from_netcdf(url, data_vars, bbox, lazy, **xr_kwargs)
 
 
-class Regis(LayerModel):
+class Regis(LayerModel):  # pragma: no cover
     pass

geost/models/basemodels.py

@@ -11,7 +11,7 @@
 from .model_utils import sample_along_line, sample_with_coords
 
 
-class AbstractSpatial(ABC):
+class AbstractSpatial(ABC):  # pragma: no cover
     @property
     @abstractmethod
     def xmin(self):
@@ -71,7 +71,7 @@ def select_by_values(self):
         pass
 
 
-class AbstractModel3D(ABC):
+class AbstractModel3D(ABC):  # pragma: no cover
     @property
     @abstractmethod
     def zmin(self):
@@ -275,35 +275,35 @@ def select_with_points(self, points: str | Path | gpd.GeoDataFrame) -> xr.Datase
 
         return sample_with_coords(self.ds, coords)
 
-    def select_with_line(self):
+    def select_with_line(self):  # pragma: no cover
         raise NotImplementedError()
 
-    def select_within_polygons(self):
+    def select_within_polygons(self):  # pragma: no cover
         raise NotImplementedError()
 
-    def select_within_bbox(self):
+    def select_within_bbox(self):  # pragma: no cover
         raise NotImplementedError()
 
-    def select_by_values(self):
+    def select_by_values(self):  # pragma: no cover
         raise NotImplementedError()
 
-    def select_top(self):
+    def select_top(self):  # pragma: no cover
         raise NotImplementedError()
 
-    def select_bottom(self):
+    def select_bottom(self):  # pragma: no cover
         raise NotImplementedError()
 
-    def slice_depth_interval(self):
+    def slice_depth_interval(self):  # pragma: no cover
         raise NotImplementedError()
 
-    def select_surface_level(self):
+    def select_surface_level(self):  # pragma: no cover
         raise NotImplementedError()
 
-    def zslice_to_tiff(self):
+    def zslice_to_tiff(self):  # pragma: no cover
         raise NotImplementedError()
 
 
-class LayerModel(AbstractSpatial, AbstractModel3D):
+class LayerModel(AbstractSpatial, AbstractModel3D):  # pragma: no cover
     def __init__(self):
         raise NotImplementedError("No support of LayerModel yet.")
 

geost/read.py

@@ -384,7 +384,7 @@ def read_nlog_cores(file: str | Path) -> BoreholeCollection:
 
 def read_xml_geotechnical_cores(
     file_or_folder: str | Path,
-) -> BoreholeCollection:
+) -> BoreholeCollection:  # pragma: no cover
     """
     NOTIMPLEMENTED
     Read xml files of BRO geotechnical boreholes (IMBRO or IMBRO/A quality).
@@ -394,7 +394,9 @@ def read_xml_geotechnical_cores(
     pass
 
 
-def read_xml_soil_cores(file_or_folder: str | Path) -> BoreholeCollection:
+def read_xml_soil_cores(
+    file_or_folder: str | Path,
+) -> BoreholeCollection:  # pragma: no cover
     """
     NOTIMPLEMENTED
     Read xml files of BRO soil boreholes (IMBRO or IMBRO/A quality).
@@ -403,7 +405,9 @@ def read_xml_soil_cores(file_or_folder: str | Path) -> BoreholeCollection:
     pass
 
 
-def read_xml_geological_cores(file_or_folder: str | Path) -> BoreholeCollection:
+def read_xml_geological_cores(
+    file_or_folder: str | Path,
+) -> BoreholeCollection:  # pragma: no cover
     """
     NOTIMPLEMENTED
     Read xml files of DINO geological boreholes.
@@ -412,7 +416,9 @@ def read_xml_geological_cores(file_or_folder: str | Path) -> BoreholeCollection:
     pass
 
 
-def read_gef_cores(file_or_folder: str | Path) -> BoreholeCollection:
+def read_gef_cores(
+    file_or_folder: str | Path,
+) -> BoreholeCollection:  # pragma: no cover
     """
     NOTIMPLEMENTED
     Read gef files of boreholes.
@@ -442,7 +448,7 @@ def read_gef_cpts(file_or_folder: str | Path) -> CptCollection:
     return DiscreteData(df).to_collection()
 
 
-def read_xml_cpts(file_or_folder: str | Path) -> CptCollection:
+def read_xml_cpts(file_or_folder: str | Path) -> CptCollection:  # pragma: no cover
     """
     NOTIMPLEMENTED
     Read xml files of cpts.

pyproject.toml

@@ -120,6 +120,11 @@ markers = [
 	"integrationtest: test of multiple components",
 ]
 
+[tool.coverage.report]
+exclude_lines = [
+  "pragma: no cover",
+]
+
 [tool.black]
 line-length = 88