simulation testing and hierarchical implementation

[hyunjimoon]

In demo_simulation_test.py, basic settings with different S, M, N, Q, R and time_step is ready.

sbc_hier folder contains hierarchical extension with S = 1
sbc_hier2 folder contains hierarchical extension with S = 3

ONE TOUGH(not hierarchy, yet) + CONSISTENCY between contents in three folders plot, data, stan_files are key.

When revisiting this start from:

1. implement automatic stan translator (for stan file is manually changed, the file can be checked in sbc_hier Putting prior, prior predictive, posterior into one inferencedata for hierarchical sbc #12
2. combine draws2data2draws_hier with draws2data2draws function

[hyunjimoon]

while increasing S to 3, the following prior_predictive appeared; should check prior_pred_check fucntion

pp_S1R2 needs fixing

[tomfid]

The link to demo_simulation_test.py gives me a 404 error - guessing all this moved?

[hyunjimoon]

The link to demo_simulation_test.py gives me a 404 error - guessing all this moved?

Organized it all yesterday: https://github.com/Data4DM/stanify/blob/main/prey_predator.py

By the way, because of C++ toolchain and compilation (which thankfully gives speedup, desired by Hazhir), some students were having difficulty installing cmdstanpy. Did you manage to run it on your local computer? I heard for windows, you should run cmdstanpy.install_cmdstan(compiler = True)

This is the slack channel I asked about installing cmdstan last week